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24 protocols using ix71s1f 3

1

Microglial Phagocytic Activity Assay

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Microglial phagocytic activity was measured using carboxylate-modified 2 μm latex beads. Pure microglial cell cultures were incubated with 0.005% (w/v) latex beads for 2 h (5% CO2, 37 °C). Cell nuclei were stained with Hoechst33342 (4 μg/mL) for 5 min. To remove excess beads, the cell cultures were washed with PBS buffer several times and then fixed with 4% paraformaldehyde. Microglial cells were visualised under fluorescence microscope (Olympus IX71S1F-3, Japan) at 40 × magnification. Number of phagocytosed latex beads in microglial cells was calculated using ImageJ 1.8.0 software in at least 5–7 microscopic fields.
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2

Propidium Iodide Assay for Fungal Membrane Permeability

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Membrane permeability was determined by the uptake of propidium iodide (PI) according to the reported method, with minor modification [28 (link)]. The harvested conidia grew in PDB at 28 °C at 155 rpm for 24 h. Then, the LP was added to a final concentration of 60 µg/mL for another 6 h. Subsequently, the cells were washed with and resuspended in 1 mol/L PBS (pH 7.2) and then incubated with 50 μg/mL PI in the dark for 20 min at room temperature. The fluorescence images were obtained with a fluorescence microscope (Olympus IX71S1F-3). The mycelia without LP treatment were used as control.
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3

Apoptosis Analysis via TUNEL Assay

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Analysis of apoptosis was performed using TUNEL kit (Click-iT TUNEL Alexa Fluor Imaging Assay, Invitrogen) following the manufacturer’s protocol. Briefly, cells were plated at 2.5 × 105 cells/six-well plate. After adhesion, the cells were treated with cisplatin (50 μM) alone or combined with either 5 μg/ml of PFOTE or OTE for 24 h before analysis. After fixation and permeabilization, cells were stained with TUNEL reaction mixture containing FITC-dUTP. Apoptotic nuclei (green) were observed under an Olympus inverted fluorescence microscope IX71S1F-3 (× 20).
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Cell Immunofluorescence Staining Protocol

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For cell staining, cultures were washed twice with 1× phosphate-buffered saline (PBS) (Welgene, Republic of Korea) and fixed in 4% formaldehyde (Sigma-Aldrich, Inc., Saint Louis, MO, USA) in PBS for 15 min at room temperature. The cells were then washed thrice with 1× PBS and permeabilized with 0.1% Triton-X-100 (USB Corporation, OH, USA) in PBS for 10 min at room temperature. The cells were washed thrice with 1×PBS and blocked with a blocking solution containing 1% bovine serum albumin (BSA) (Amresco, France), 22.52 mg/ml glycine (Affymetrix, CA, USA), and 0.1% Tween 20 (Affy-metrix, CA, USA) in PBS for 60 mins. Subsequently, the cells were incubated with primary antibodies diluted in dilution solution containing 1% BSA (Amresco, France) and 0.1% Tween 20 (Affymetrix, CA, USA) overnight at 4℃. The cells were then washed thrice with 1× PBS containing 0.1% Tween-20 (PBST) and incubated with secondary antibodies for 2 h at room temperature. Cells were then washed thrice with PBST and incubated with 1 μg/ml DAPI (Sigma-Aldrich, MO, USA) for 5 min at room temperature to stain the nuclei. The samples were subsequen-tly visualized using a fluorescence microscope (IX71S1F3, Olympus, Japan). All antibodies used in this study are listed in Supplementary Table S2.
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5

Calcium Imaging of Neuron-like Cells

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Calcium imaging was performed on MAP2+/NeuN+/vGLUT1+ neuron-like cells derived from human fibroblast using Rhoda-2-AM (Sigma-Aldrich, Inc., Saint Louis, MO, USA) at a concentration of 2 μM. Imaging was performed in Live-Imaging Solution (Invitrogen, Thermo Fisher Scie-ntific, Inc., Waltham, MA, USA). Images were acquired at 30 frames/s using a scientific CMOS camera. The microscope was controlled by Micro-Manager software and the image processor ImageJ. The samples were visualized using fluorescence microscopy (IX71S1F3, Olympus, Tokyo, Japan). Changes in fluorescence were measured for individual cells, and the average of the first 10 time-lapse images for each region of interest (ROI) was defined as the initial fluorescence (F0).
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6

Assessment of Neuronal Viability in Co-Cultures

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Neuronal viability and number in neuronal-glial co-cultures were assessed by cell nuclei staining with Hoechst33342 and propidium iodide (PI) (Fig. 2S). Neurons were identified by characteristic morphology in phase contrast images. Cells with homogeneously stained Hoechst33342 (blue) were considered as viable and PI-positive (red) cells as necrotic. Cells with condensed/fragmented nuclei (Hoechst33342, bright blue) were considered as apoptotic. Microglial cells were labelled with isolectin GS-IB4 from Griffonia simplicifolia and AlexaFluor488 (green) conjugate. Cell cultures were incubated with 4 μg/mL Hoechst33342, 7 μM PI and 7 ng/mL isolectin GS-IB4-AlexaFluor488 conjugate for 15 min (5% CO2, 37 °C). Cell cultures were analysed under fluorescence microscopy (Olympus IX71S1F-3, USA). The total number of neurons and microglia was counted in 4–5 randomly chosen microscopic fields at 20 × and 10 × magnification, respectively. Quantification was carried out using ImageJ 1.8.0 software.
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7

Quantifying Brain Cell Populations in Ischemia

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At least two histological brain sections per animal were used for each staining to detect isolectin-GS-IB4-, Iba-1-, IL-10- and NeuN-positive cells. Stained brain sections were analyzed by fluorescence microscopy (Olympus IX71S1F-3, Orangeburg, NY, USA) at 20× magnification. Four brain regions (ischemic and non-ischemic cortex and striatum) were analyzed in each experiment on an individual animal (Figure 11a), and cells were counted in five randomly selected microscopic fields in each brain region on the histological section. Calculation of average cell numbers were performed using ImageJ program. Data were expressed as mean number of cells per field. Analysis of sections was performed by an independent researcher to avoid bias in assessing the protective effect of treatment. Representative images were obtained using the confocal laser-scanning microscope LSM 700 with ZEN 2010 software (Carl Zeiss, Jena, Germany) at 40× magnification.
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8

Nanoparticle Uptake in Cancer Cells

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K7M2 cells were seeded in 6-well plates. After culturing for 24 h, the medium was replaced with mFeD nanoparticles (1 mg mL−1, 50 μL) and M-mFeD nanoparticles (1 mg mL−1, 50 μL) for 2 and 4 h, respectively. The cells were then washed three times with PBS and fixed with 4% paraformaldehyde solution at room temperature. Finally, the cell nuclei were stained with DAPI for fluorescence microscopy (IX71S1F-3, OLYMPUS, Japan). In addition, flow cytometry was used to quantify the fluorescence intensity. According to the same method above, the K7M2 cells were seeded in 6-well plates, and after the incubation with different nanoparticles, the cells were collected and analyzed using a CytoFLEX flow cytometer (Beckman Coulter, USA).
In addition, SKOV3 cells were seeded in 6-well plates. After culturing for 24 h, the medium was replaced with mFeD nanoparticles (1 mg mL−1, 50 μL) and M-mFeD nanoparticles (1 mg mL−1, 50 μL) for 4 h. Then, the cells were washed three times with PBS and fixed with 4% paraformaldehyde solution at room temperature. Finally, the nuclei were stained with DAPI and the cells were observed under fluorescence microscopy.
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9

3D Matrigel Spheroid Culture

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HT-1080 cells were seeded in matrigel (BD Biosciences) coated 96-well plate (50 μl per well). After 20-min incubation, the standard medium was replaced by that containing 5% matrigel. Cells were cultured and fluorescence microscopy images were obtained (IX71S1F3, Olympus) on days 1 and 6.
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10

Evaluating H2O2-Induced Cytotoxicity in RAW264.7 Cells

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RAW264.7 cells (5.0 × 104 cells/mL) were incubated in 96-well plates at the condition of 5% CO2 at 37°C for 24 h. After which, the medium was removed, and different concentrations of H2O2 (0, 200, 300, 400, 500, 600, 700, 800, 900 μmol/L) diluted with RPMI-1640 culture medium were added to each group (Navarro-Hoyos et al., 2018 (link)). The cell viability was detected using the Cell Counting Kit-8 (CCK-8, EnoGene Co., Shanghai, China) after 4 h of incubation. At the same time, the morphology of the cells after treatments was observed using an inverted microscope (IX71S1F-3 OLYMPUS CORPORATION, TOKYO, JAPAN).
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