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6 protocols using l glutamine

1

Culture of B-cell lines in RPMI 1640

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BC3, BCBL1 (human B-cell lines derived from PEL carrying latent KSHV), Raji (human B cell line derived from BL carrying latent EBV) and B95-8 (marmoset B-cell line EBV-infected)31 (link) were cultured in RPMI 1640 (Sigma Aldrich), 10% Fetal Bovine Serum (FBS) (Sigma Aldrich), L-glutamine (Aurogene) and streptomycin (100 μg/ml) and penicillin (100 U/ml) (Aurogene) in 5% CO2 at 37 °C.
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2

Modulation of STAT3 and NFE2L2 in PEL

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Human B cell lines derived from KSHV-positive PEL cell lines, BC3, and BCBL-1 (kindly supplied by Prof. P. Monini, National AIDS center, Istituto Superiore di Sanità, Rome, Italy) were grown in RPMI 1640 medium (Sigma-Aldrich, Burlington, MA, USA) supplemented with 10% fetal bovine serum (FBS) (Sigma-Aldrich, Burlington, MA, USA), L-glutamine (2 mM) (Aurogene, Rome, Italy), and streptomycin/penicillin (100 μg/mL) (Aurogene, Rome, Italy) (complete medium) at 37 °C in a 5% CO2 humified setting. Cells were seeded into 6-well plates at a density of 4 × 105 per well in a final volume of 2 mL in complete medium and were treated for 24 h (h) singly or in combinations with the STAT3 inhibitor tyrphostin AG490 (50–100–200 µM) (Calbiochem, San Diego, CA, USA; 658411) and the NFE2L2 inhibitor brusatol (10–20–40 nM) (Sigma Aldrich, St. Louis, MO, USA; 1868). In some experiments, to evaluate the role of HSP90A and HSPB1 in the mechanism/s to which NFE2L2 could sustain STAT3 activity and vice versa, PEL cells were treated for 24 h with inhibitors of HSPB1 and HSP90A, respectively, J2 (10 µM) (MedChemExpress, Monmouth Junction, NJ, USA; HY-124653), 17-AAG (0.1 µM) (Selleckem, Planegg, Germany; S1141). All the drugs were dissolved in DMSO, and the control cells were supplemented with DMSO in the same amount used for the other samples.
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3

Culturing Human Colon Cancer Caco-2 Cells

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Human colon carcinoma Caco-2 cells (ATCC, HTB-37 clone) were routinely cultured in 25 cm2 culture flasks (BD Biosciences, New Jersey, USA) in Dulbecco’s modified Eagle’s medium (DMEM) at pH 7.4. Supplementation was with 10% (v/v) heat-inactivated fetal bovine serum (FBS), 1% (v/v) HEPES 1M, 1% (v/v) non-essential amino acids (Gibco), 1% L-glutamine 200 mM, penicillin (100 U/mL), and streptomycin (100 mg/mL) (Aurogene, Italy). Cells stayed in an incubator at 37 °C in a 5% CO2 and 95% air-humidified atmosphere. Refreshing of the medium was every 2–3 days and cells were split once a week. Cells were observed periodically for changes in growth by using an inverted-phase contrast microscope (Olympus, CK2 model). For cell treatments, freeze-dried digested pasta samples were resuspended in DMEM (10 mg/mL, stock solution) and sterilized through 0.22 mm filter membrane (Millipore Corporation, Bedford, MA, USA).
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4

THP-1 Cell Differentiation and Inflammasome Activation

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Human myelomonocytic THP-1 cells were cultured in RPMI 1640 medium (Aurogene, Rome, Italy) supplemented with fetal bovine serum (10%; Aurogene), L-glutamine (2 mM; Aurogene), penicillin (100 IU/mL; Aurogene) and streptomycin (100 mg/mL; Aurogene). Cell culture medium was replaced every 2−3 days, and the cultures were maintained at 37 °C and 5% CO2 in a fully humidified incubator. The day before each experiment, cells were plated in 48-well culture plates (90.000 cells/well) and were differentiated by treatment with PMA (50 nM, 24 h; Sigma-Aldrich). PMA-differentiated THP-1 cells were washed twice with phosphate-buffered saline (PBS) and primed with LPS (10 μg/mL, 4 h; Sigma-Aldrich) in serum-free medium. Cells were then incubated with compounds dissolved in medium containing 0.1% DMSO for 1 h and cell death was triggered with ATP (5 mM, 90 min; Sigma-Aldrich). MCC950 (Sigma-Aldrich batch #45216 and batch #85021 and from Crysdot (product n. CD31002496; OS05876-18070932) was used in the experiments.
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5

Cell Line Cultivation and Treatment

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MM cell lines SKO-007 (J3) (SKO) and RPMI-8226 (RPMI) and PEL cell lines BC3 and BCBL1 [23 (link)] were maintained in RPMI 1640 medium (Sigma-Aldrich, Burlington, MA, USA), supplemented with 10% fetal bovine serum (FBS) (Sigma-Aldrich, Burlington, MA, USA), L-glutamine (2 mM) (Aurogene, Rome, Italy), streptomycin/penicillin (100 μg/mL) (Aurogene, Rome, Italy) at 37 °C and 5% CO2 humidified atmosphere. The cells were seeded into 6-well plates at a density of 6 × 105 cells per well in a final volume of 2 mL. Subsequently, the cells were treated for 24 h (h) with c-Myc Inhibitor (I c-Myc) (50 μM) (Sigma-Aldrich, Burlington, MA, USA, 475956) or IRE1 RNAse inhibitor (4µ8c) (20 μM) (Sigma-Aldrich, Burlington, MA, USA, SML0949). Untreated cells were used as a control group (CTRL).
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6

Modulating Pancreatic Cancer Cell Response

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The human pancreatic cancer cell line Panc1, obtained from the American Type Culture Collection, and PaCa44 from Dr. von Bulow (University of Mainz, Germany) were cultured as monolayers in RPMI 1640 (Sigma Aldrich, R0883), 10% FBS (Sigma-Aldrich, F7524), L-glutamine (Aurogene, AU-X0550), and streptomycin (100 mg/mL) and penicillin (100 U/mL; Aurogene, AU-L0022) in 5% CO 2 saturated humidity at 37 C and regularly tested for Mycoplasma. Cells were always detached using Trypsin-EDTA solution (Euroclone). VPA (P4543), TSA (T8552), GSK 2606414 (GSK; 516535) and Celecoxib (cele; PZ0008) were all purchased from Sigma-Aldrich. PG E2 (PGE2; sc-201225) was purchased from Santa Cruz Biotechnology.
PaCa44 and Panc1 cells were plated in 6-well plates at a density of 2 Â 10 5 cells/well in 2 mL. The following day, when the cells were in the exponential growth phase, cells were treated with TSA (0.5 mg/ mL; ref. 28) and VPA (10 mmol/L) and left untreated as control CT.
In some experiments before adding VPA, cells were pretreated for 1 hour with GSK (0.5 mmol/L; ref. 29) or cele (5 mmol/L). After 24 hours, supernatant were collected and stored at À80 C. They were subsequently used to detect ATP and PGE2 and added to DC cell cultures. In some experiments, PGE2 (10 -9 mol/L) was added to the cultures.
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