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4 protocols using matrigel membrane matrix

1

Prostate Cancer Organoid Culturing

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Organoid assays were performed as described earlier (31 (link)). Briefly, PC3M, LNCaP-abl, MSKPCa1, and MSKPCa3 cells were detached using Accutase (Innovative Cell Technologies, San Diego, CA), collected using 70-μm cell strainers, counted (1×103 cell/well for PC3M cells and 5×103 cell/well for LNCaP-abl, MSKPCa1, and MSKPCa3 cells), and resuspended in prostate organoid media (29 (link)) and mixed with Matrigel Membrane Matrix (Fisher Scientific CB-40234C) in a 1:1 ratio. The cell and Matrigel mixtures were plated on ultra-low attachment plates and allowed to grow for the indicated times. Detailed schematic representations of the organoid experiments are shown in Supplementary Figure S6A. Organoids were counted and photographed using GelCount colony counter (Oxford Optronix, Abingdon, England).
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2

Angiogenesis Assay with HUVEC on Matrigel

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Frozen vials of Matrigel Membrane Matrix (Fisher Scientific, USA) were thawed on ice at +4 °C overnight. Matrigel was added (50 µL/well) into 96-well plates (TPP Techno Plastic Products AG, Trasadingen, Switzerland) and allowed to polymerize at 37 °C for 30 min. Meanwhile, HUVECs were detached from wells/flasks using trypsin-EDTA (Gibco, Life Technologies, Carlsbad, USA). Using basal Vasculife medium (2% Fetal Bovine Serum/FBS) with or without IL-6/sIL-6R (100 ng/mL each), suspension of HUVECs was prepared, and 104 cells per well were added to the polymerized Matrigel in duplicate. The plates were placed in IncuCyte S3 Live Cell Analyses System (Sartorius AG, Göttingen, Germany) and the tube formation progress was monitored over a period of 24 h by taking pictures every hour (3 images per well). The images (10× magnification) were subsequently analyzed using Angiogenesis-Analyzer macro written for ImageJ1. The macro is available online at http://imagej.nih.gov/ij/macros/toolsets/Angiogenesis%20Analyzer.txt.
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Culturing and Fixing Cell Lines

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Jurkat, U937, Ramos, HEL, Reh, THP-1 and NCI-H460 cells were cultured in RPMI-1640 supplemented with 10% FBS, 1x L-glutamine and 1x penicillin/streptomycin (Thermo Fisher). HeLa and 293 T cells were cultured in DMEM (Corning) supplemented with 10% FBS and 1x penicillin/streptomycin. NTERA cells were cultured in DMEM supplemented with 20% FBS and 1x penicillin/streptomycin. A549 were cultured in F-12K Medium (Thermo Fisher) and HCT 116 cells in McCoy’s 5a Medium (Thermo Fisher), both supplemented with 10% FBS, 1x L-glutamine and 1x penicillin/streptomycin. H9 hESCs were cultured feeder-free in StemMACS iPS Brew (Miltenyi Biotec) on a Matrigel Membrane Matrix (Thermo Fisher). All cell lines were cultured at 37 °C, 5% CO2. For sample collection, adherent cell lines were washed with PBS, dissociated by adding Accumax (Thermo Fisher) for 5 min at 37 °C and subsequently washed in their respective medium. Cells from cancer cell lines were fixed with 1.6% PFA in PBS (Electron Microscopy Sciences) for 10 min at RT and stored at −80 °C.
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4

Cell Invasion Assay using Matrigel

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Uncoated inserts with 8-μm pores (Catalog #82050, Greiner Bio-One, Monroe, NC, USA) were coated with 100 μL of a diluted growth factor reduced Matrigel membrane matrix (300 μg/mL, ThermoFisher Scientific) and incubated at 37°C for 2 hours. Coated inserts were then placed into a 24 well plate containing 750 μL normal culture media. 1-2 x105 cells were suspended in 250 μL media supplemented with 1% FBS and seeded into the upper chamber of insert. Cells invaded for 16 hours. Inserts were then cleaned, fixed, and stained with Diff Quik as per manufacturer's instructions (ThermoFisher Scientific). The number of cells invading was determined by counting five random fields per insert (counted by a blinded second party). Percent invasion was calculated by dividing the total number of cells invaded by the average number of cells invaded for the appropriate control.
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