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10 protocols using ceramide c6

1

Investigating Inflammatory Signaling Pathways

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Cell culture supplements were purchased from Invitrogen (Carlsbad, CA, USA). Antibodies against IL-6 (SC-28343), p-p65 (Ser536; SC-101752), p-65 (SC-8008), p-85 (SC-1637), p-AKT (Thr308; SC-16646-R), AKT (SC-5298), p-IKKα/β (Ser180/Ser181; SC-23470-R), IKKα/β(SC-7607), p-IκBα (Ser32; SC-8404), IκBα (SC-203), PCNA(SC-36), and β-actin (SC-58673), and C6 ceramide (an ERK activator), were all purchased from Santa Cruz (Santa Cruz, CA, USA). Anti-TNF-α (a11534) was obtained from Abclonal (Woburn, MA, USA). Antibody against p-p85 (Tyr458/Tyr199; 4228S) was purchased from Cell Signaling (Danvers, MA, USA). AKT inhibitor were supplied by Calbiochem (San Diego, CA, USA). Ly294002, TPCK and PDTC were bought from Enzo Life Sciences International (Plymouth Meeting, PA, USA) and Cell culture supplements were purchased from Invitrogen (Carlsbad, CA, USA). Dual-Luciferase® Reporter Assay System was bought from Promega (Madison, WI, USA). All other chemicals not described above were supplied by Sigma-Aldrich (St Louis, MO, USA).
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2

Melatonin Modulates Inflammatory Signaling

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Different concentrations of melatonin (Sigma-Aldrich, MO, USA) and specific inhibitors of Akt (AKTi) (Sigma-Aldrich, MO, USA) 10 μM, ERK (ERK II) (Santa Cruz Biotechnology, CA, USA) 10 μM, and PI3K (Ly294002) (Enzo Biochem, Inc., NY, USA) 10 μM, or activators of ERK (C6-ceramide) 10 μM, PI3K (740-YP) 10 μM, and Akt (SC-79) 10 μM (Santa Cruz Biotechnology, CA, USA) were added to OASFs (during passages 3–6) for 30 min, or the OASFs were transfected with p85, Akt, and ERK siRNAs (Dharmacon, Lafayette, CO, USA) for 24 h before melatonin treatment. After 24 h, conditioned medium was collected and quantified using commercially available proinflammatory factor-specific (TNF-α, IL-8, and VEGF) ELISA kits (R&D, MN, USA), according to the manufacturer’s instructions. The plates were read at 450 nm. Calculations were performed according to the standard curve for the determination of sample concentrations.
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3

LH Antiproliferative Effects on Endometrial Stem Cells

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An MTT assay was used to determine the antiproliferative capacity of LH (Cloud-clone, Cat. No.: RPA441Hu01) treatment. Briefly, cells (1 × 104 cells/well) were seeded in 48-well plates in EBM-2 medium (Lonza) supplemented with EGM-2. After 24 h of incubation, the plates were washed with PBS, and the cells were then treated with LH or vehicle for 72 h in serum and supplement-free EBM-2 medium. Thereafter, 50 µl of MTT solution (Sigma–Aldrich, M5655, 5 mg/ml in PBS) was added to each well, and the cells were incubated at 37 °C for another 3 h. Cell viability was assessed by measuring the absorbance at 570 nm using a VersaMax microplate reader. To investigate whether Akt and ERK1/2 signaling activities could mediate LH-induced inhibitory effects on tissue regeneration-associated functions, endometrial stem cells were pretreated with or without Akt activator SC79 (EMD millipore corp, 123871) or ERK1/2 activator ceramide C6 (Santa cruz, sc-3527).
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4

Miltirone Inhibits Hepatocellular Carcinoma Viability

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Miltirone (Fig. 1A) was isolated from the root of S. miltiorrhiza Bunge (S. miltiorrhiza) in our laboratory. The structure was characterized by mass spectrum (MS), 1H nuclear magnetic resonance (NMR), and 13C NMR spectroscopic methods, and the purity of the compound was greater than 98% and re-suspended in dimethyl sulfoxide (DMSO; Sigma–Aldrich, St. Louis, MO, USA). Sorafenib was purchased from Bayer (Leverkusen, Germany). N-Acetyl cysteine (NAC) was from Beyotime Institute of Biotechnology (Nanjing, China). Necrostatin-1 was purchased from Sigma–Aldrich. Ceramide C6 was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA).

Miltirone inhibited the viability of HepG2 and Hepa1-6 cells in dose- and time-dependent manners. (A) Chemical structure of miltirone. (B) and (C) HepG2 and Hepa1-6 cells were treated with miltirone (0–80 μmol/L) or Sorafenib (60 μmol/L) for 24 h, cell viability was analyzed by CCK-8 assay and expressed as mean ± SD (n = 3). (D) HepG2 and Hepa1-6 cells were treated with 40 μmol/L miltirone at indicated time, cell viability was analyzed by CCK-8 assay and expressed as mean ± SD (n = 3). ∗∗P < 0.01 vs. control.

Figure 1
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5

Amyloid-β1–42 Aggregation and Neurotrophin Signaling

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Amyloid-β1–42 (Aβ1–42) was obtained from Sigma-Aldrich (St. Louis, MO, USA). Before injection, the Aβ1–42 peptide was dissolved in a physiological saline solution at a concentration of 5 mg/ml and incubated at 37°C for 72 h to induce aggregation. Human full length BDNF (ab9794), NGF (ab138794) and NT-3 (ab138798) proteins and their corresponding rabbit polyclonal antibodies (ab75040, ab6198 and ab65804) were purchased from Abcam (Cambridge, UK). Rabbit monoclonal antibodies against phospho-ERK (#4370), total ERK (#4695), phospho-JNK (#4668), total JNK (#9258), phospho-p38 (#4511), total p38 (#9212) and GAPDH (#5174) were from Cell Signaling Technology (Beverly, MA, USA). Ceramide C6, an ERK activator, was obtained from Santa Cruz Technology (Santa Cruz, CA, USA). The ERK inhibitor PD98059 was from Sigma-Aldrich (St. Louis, MO, USA).
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6

Viral Inhibition Screening of Small Molecules

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Small molecules included Ag-126 (Santa Cruz Biotechnology, Catalogue No. sc-3528), Ceramide C6 (Santa Cruz Biotechnology, Catalogue no. sc-3527), U0126 (Cell Signaling Technology, Catalogue no. 9903), PD184352 (Selleckchem, Catalogue no. S1020), GSK1120212 (Selleckchem, Catalogue no. S2673), and AZD6244 (Selleckchem, Catalogue no. S1008). Compounds were dissolved in dimethyl sulfoxide (DMSO). U87MG cells were seeded in a 96-well plate at a density of 10,000 cells per well. The next day the cells were pretreated with the compound for 2 h. Drug concentrations were maintained in a manner that did not exceed 0.1% DMSO final concentration per well. The conditioned media containing the compound were removed and viral infections proceeded at multiplicity of infection (MOI) of 0.1 for 1 h at 37 °C. The viral inocula were then removed and replaced with the conditioned media with compound. The cells were incubated for 24 h at 37 °C, 5% CO2, and the supernatant was collected and stored at −80 °C until analyzed.
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7

Embryonic Angiogenesis Modulation

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Eggs with embryos were incubated at 37 °C in an incubator with 70% humidity. After 6 to 7 days of incubation, an air chamber was made, the shell membrane and chorioallantoic membrane were separated, and a window was opened on the shell membrane for injection. The CM from GC-shESM1 cells with or without recombinant ESM1, MAPK/ERK inhibitor SCH772984 (Selleck, Houston, TX, USA) or c-Met-inhibitor AMG-337 (Shanghai Ulva test), and the CM from GC cells with or without the ESM1-neutralizing antibody and MAPK/ERK stimulator Ceramide C6 (Santa Cruz, CA, USA) or MAPK/ERK inhibitor SCH772984 (Selleck, USA) were added to the loop by window injection. After 3 days, the CAM area was isolated, unfolded on a glass slide, and imaged under a stereomicroscope. Vascularization was assessed using image J/FIJI.
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8

Acetate-Regulated Lipid Metabolism via ERK

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To clarify the role of ERK signaling in acetate-regulated lipid metabolism induced, the 3-day differentiated cells were treated with 10 μM Ceramide C6 (an ERK1/2 activator, Santa Cruz Technology, Santa Cruz, CA, USA) or vehicle (dimethyl sulfoxide) for 12 h [22 (link)]; the cells were then given a treatment of either acetate (9 μM) or saline for 48 h before collected.
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9

Evaluating ANGPTL4 Regulation in Colorectal Cancer

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The normal colonic epithelial cell line NCM460 and the CRC cell lines including SW480, HCT116, DLD1, SW1116, Caco-2, SW620 and HT-29 were purchased from ATCC and cultured with DMEM culture medium (Gibco, USA) containing 10% fetal bovine serum (FBS, Gibco, USA), 10 μg/mL streptomycin and 100 U/mL penicillin at 37°C in a 5% CO2 incubator (Thermo Fisher, USA). For cell transfection, cells in the logarithmic phase were detached with trypsin and seeded in six-well plates at a density of 1×105 cells per well. After 24 h culture, when the cell confluence reached about 75%, the transfection was performed using a FuGENE6 transfection kit (Promega, USA) following the standard instructions provided. Following another 48 h of culture, the transfected cells were harvested and the ANGPTL4 expression was quantified using RT-qPCR. Activation of the ERK pathway was performed by treatment with 10 µM of Ceramide C6 (Santa Cruz Biotechnology, Santa Cruz, CA, USA) 13 (link). The cells were divided into shCtr group (transfected with silencing negative control plasmid), shANGPTL4 group (transfected with shANGPTL4 plasmid), control group (transfected with negative control overexpression plasmid), ANGPTL4 group (transfected with oe-ANGPTL4 plasmid), and ANGPTL4 + Ceramide C6 group (transfected with oe-ANGPTL4 plasmid + Ceramide C6).
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10

Cellular Signaling Pathway Analysis

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Treatment reagents included MG132 (Merk, Schwalbach, Germany), CA (Cell Signaling Technologies, Beverly, MA), OA (Merk), Ceramide C6 (Santa Cruz Biotechnology Inc., Santa Cruz, CA), Cyclohexamide (Merk) and S3I-201 (Merk).
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