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10 protocols using chemiluminescence analyzer

1

Western Blot Protein Analysis Protocol

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Whole-cell or tissue extracts were lysed in RIPA buffer (Thermo Scientific, USA) containing protease inhibitor and phosphatase inhibitor (Roche, Switzerland). The resulting lysates were then electrophoresed by 12% SDS-PAGE and transferred to 0.2-μm polyvinylidene difluoride membranes (Merck Millipore). These membranes were blocked in 5% nonfat milk for 2 h at room temperature, incubated with primary antibodies at 4 °C overnight and then treated with HRP-linked secondary antibodies for 1.5 h at room temperature. After the membranes were washed with phosphate-buffered saline containing Tween 20 (PBST), the protein bands were visualized using a Pierce ECL development system (Thermo Scientific, USA) via a chemiluminescence analyzer (Bio-Rad, USA) for different exposure times. The antibody information is listed in Additional file 1: Table S2, and β-Actin (A3854, Sigma-Aldrich) was used as a loading control.
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2

Western Blot Analysis of Hippocampal and SH-SY5Y Proteins

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Proteins extracted from the hippocampal region of rat brains and SH‐SY5Y cells were analyzed by Western blotting. In brief, the total proteins of brain tissue samples and SH‐SY5Y cells were extracted by Total Protein Extraction Kit (Promega), then the total proteins were pooled together by group. Following quantification of the protein extracts with the bicinchoninic acid procedure, the samples were loaded onto 10% polyacrylamide gels, separated by electrophoresis, and subsequently transferred to PVDF membranes. After blocking these membranes for 2 h with Tris‐buffered saline containing Tween 20 (TBST), they were incubated overnight with anti‐NQO2, ‐p‐mTOR, ‐ATG5, ‐LC3A/B, or ‐p62 antibodies and thereafter with anti‐rabbit IgG antibody for 2 h. After ECL staining, specific bands were detected by Biorad Chemiluminescence Analyzer and their densities determined with the Imagine J software, USA. The experiments were performed with three technical replicates.
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3

Western Blot Analysis of Protein Expression

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Cells or tissues were lysed using radio-immunoprecipitation assay (RIPA) buffer (#89901, Thermo Scientific, Waltham, MA, USA) containing a phosphatase inhibitor (#04906837001; Roche, Basel, Switzerland) and protease inhibitor cocktail (#04693132001; Roche). After denaturing and SDS-PAGE, the proteins were transferred to polyvinylidene difluoride membranes (#IPVH00010; Millipore, Bedford, MA, USA). The membranes were blocked and incubated with primary antibodies at 4°C overnight. HRP-conjugated secondary antibodies were used to probe the proteins, and the results were visualized with a chemiluminescent substrate (#34580; Thermo Scientific) using a chemiluminescence analyzer (Bio-Rad, Hercules, CA, USA). Antibody information is listed in Supplementary Table S4.
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4

Quantification of CXCL12 in HCC Cells

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Human primary HCC tissues and cells were lysed with RIPA buffer (Thermo Scientific, MA, USA) supplemented with a protease inhibitor cocktail and phosphatase inhibitor (Roche, Welwyn Garden, Swiss). After the proteins were quantified and denatured, samples were separated by SDS-PAGE electrophoresis and then transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Massachusetts, USA). The membranes were blocked with 5% nonfat milk solution for 1 h at room temperature, incubated with primary antibody overnight at 4 °C and then reacted with HRP-conjugated secondary antibody for 1.5 h at room temperature. The protein bands on the membranes were visualized by a Pierce ECL development system (Thermo Scientific, MA, USA) via a chemiluminescence analyzer (Bio-Rad, CA, USA). β-actin was used as an internal loading control for all the western blot experiments. The antibodies used are listed in Table S2. The CXCL12 levels in the cultured supernatants of HCC cells were measured by ELISA (R&D Systems, Minneapolis, USA) according to the manufacturer's instructions.
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5

Quantifying Cardiac Protein Levels

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The quantities of cardiac proteins, especially troponins, were determined using Western blotting assays as described previously [2 ]. The immunoreactive bands were detected with a Chemiluminescence Analyzer, scanned and analyzed using Quantity One Version 4.4 software (Bio-Rad, Richmond, CA).
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6

Western Blot Analysis of HaCaT Cells

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The western blot technique was used to detect the protein expression of HaCaT cells. At the end of the treatment, the cells were washed with PBS 3 times and lysed with RIPA buffer for 30 min. The concentration of protein was determined by the BCA Protein Assay Kit (Elabscience, Wuhan, China). The protein samples were subjected to SDS-PAGE gel electrophoresis and then transferred to PVDF membranes. The blots were incubated overnight at 4 ℃ with the following primary antibodies: GADPH (ab8245, Abcam, 1: 5000), p53 (ab32389, Abcam, 1: 5000), MPO (ab208670, Abcam, 1: 1000), TNF-α (ab183218, Abcam, 1: 2000), IL-1β (ab254360, Abcam, 1: 1000), MMP-1 (ab134184, Abcam, 1: 1000) and MMP-3 (ab52915, Abcam, 1: 5000). The membranes were visualized using a chemiluminescence analyzer (Bio-Rad, Hercules, CA, USA). The relative density of protein bands was analyzed using the ImageJ software, and optical density values were normalized to GADPH.
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7

Western Blot Analysis of Notch1 and Jagged1

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Cells on the culture dish were collected and lysed using pre-cooled RIPA lysis buffer. Loading buffer was added, the sample was boiled, and SDS-PAGE was performed. Samples were transferred onto a nitrocellulose membrane. The membrane was blocked for 1 hour, and then incubated with goat anti-Notch1 polyclonal antibody, rabbit anti-Jagged1 polyclonal antibody and goat anti-rat GAPDH monoclonal antibody (1:500; Santa Cruz Biotechnology, Santa Cruz, CA, USA) at 4°C overnight. The membrane was washed with TBS-Tween three times and incubated with rabbit anti-goat IgG or goat anti-rabbit IgG (1:2,000; Beijing Zhongshan Golden Bridge, Beijing, China). Reactive bands were detected with a chemiluminescence analyzer (Bio-Rad, Hercules, CA, USA).
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8

Western Blot Analysis of Protein Levels

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The protein level of the treated GA was explored by WB analysis. Total proteins of H1299 cells were extracted by RIPA buffer with proteinase and phosphatase inhibitor cocktail (Bimake, Houston, USA), and then determined concentration by Bradford protein assay kit. The membrane was blocked with 5% non-fat milk for 2 h and incubated by primary antibodies overnight. And then the membrane was washed and incubated with a secondary antibody for 2 h. Ultimately, the nitrocellulose membrane was visualized by Western Lightning® Plus 8 ECL (PerkinElmer, Inc, Waltham, MA, USA), and detected using a chemiluminescence analyzer (Bio-Rad, Inc, CA. USA). β-actin was employed as a control protein.
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9

Western Blot Analysis of Cellular Proteins

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Total proteins extracted from the cells were lysed with RIPA buffer (Thermo Scientific, USA) and separated on 8%–12% SDS-PAGE gels, transferred onto polyvinylidene fluoride membranes (Millipore, USA), incubated with primary antibodies overnight at 4°C, probed with horseradish peroxidase-conjugated secondary antibodies, and visualized using enhanced chemiluminescence reagent (Pierce, USA) via a chemiluminescence analyzer (Bio-Rad, USA). Information on the antibodies is listed in Table S3.
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10

Western Blot Protein Analysis

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Total proteins extracted from the cells were lysed with RIPA buffer (Thermo Scienti c, USA) and separated on 8% -12% SDS-PAGE gels, transferred onto polyvinylidene uoride (PVDF) membranes (Millipore, USA), incubated with primary antibodies overnight at 4°C, probed with HRP-conjugated secondary antibodies, and visualized using enhanced chemiluminescence reagent (Pierce, USA) via a chemiluminescence analyzer (Bio-Rad, USA). Information on the antibodies is listed in Supplementary Table S3.
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