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3 protocols using anti human ido1

1

Western Blot Analysis of Cellular Proteins

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Cells were collected, lysed in M2 lysis buffer and sonicated. The protein concentrations were determined by a BCA kit (Applygen Technologies Inc., China). Then, the protein was run on a SDS-PAGE gel and transferred to nitrocellulose. Nitrocellulose membranes were blocked in 5% bovine serum albumin (BSA) and probed with antibodies overnight: anti-actin (Cell Signaling, Cat. 3700; 1:1,000); anti-human IDO1 (Cell Signaling, Cat. 86630; 1:1,000); anti-mouse IDO1 (Merck, Cat. 05–840; 1:1,000); anti-mucin 1 (Abcam, Cat. ab45167; 1:1,000); anti-mucin 2 (Abcam, Cat. ab272692; 1:1,000); anti-mucin 5A (Abcam, Cat. ab24071; 1:100); anti-mucin 5B (Abcam, Cat. ab77995; 1:1,000); anti-mucin 6 (Abcam, Cat. ab192318; 1:1,000); anti-mucin 7 (Abcam, Cat. ab105466; 1:1,000); anti-mucin 13 (Abcam, Cat. ab124654; 1:1,000) or anti-mucin 16 (Abcam, Cat. ab1107; 1:1,000). Secondary antibodies conjugated to horseradish peroxidase were followed by enhanced chemiluminescence (Thermo fisher, MA). Results were confirmed by at least three independent experiments.
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2

Immunohistochemical Analysis of IDO1 and CD68 in ccRCC

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Tissue from ccRCC tumors and adjacent normal kidneys were archived following IRB approval at UC Davis Department of Pathology. Paraffin sections (4 μm) of formalin-fixed tissue were stained for IDO1 using heat-induced antigen retrieval in citrate buffer (pH 6.0) and anti-human IDO1 (Cell Signaling Technology), followed by Mach 2 Rabbit HRP-Polymer (BioCare Medical, Concord, CA) and ImmPACT diaminobenzidine peroxidase substrate (Vector Laboratories, Burlingame, CA). Immunohistochemistry for CD68 was done using heat-induced antigen retrieval at pH 9 (Dako, Carpinteria, CA), mouse monoclonal anti-CD68 (Leica Biosystems, Newcastle Upon Tyne, UK) and Mouse-on-canine HRP-polymer (BioCare Medical) prior to detection with NovaRed (Vector Laboratories). A pathologist (F.U.) scored IDO staining using a subjective scale of 0 (no IDO staining) to 3 (20-40% of cells were stained) without assigning a grade to the tumors in order to minimize possible bias of the IHC analysis. No more than 40% of all cells in any slide stained positive. Staining of CD68 was scored as a percentage of interstitial cells that were positive with a score 0 (no staining) to 5 (40-50% positive stained interstitial cells).
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3

Immunohistochemical Profiling of Glioma

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Formalin-fixed, paraffin-embedded WHO grade 3 to 4 primary and recurrent human glioma tissues were obtained from the archives of the Department of Neuropathology, Heidelberg and were cut to 3 μm sections and processed using a Ventana Benchmark Ultra immunostainer. The DAB staining procedure included blocking of endogenous peroxidase with 0.3% H2O2 for 3 minutes and treatment with blocking buffer, followed by incubation with the primary antibody at 4°C overnight. Incubation was followed by ABC-Kit-Solution for 30 minutes, washing and counter-staining with hematoxylin for 2 minutes. Positivity was visualized with 3′3 diaminobenzidine (DAB; brown) using the ultraView Universal DAB Detection Kit (Ventana Medical Systems, Inc.). The following primary antibodies were used: anti-human CD8 (1:50, Dako M7103), anti-human CD3 (1:200, Thermo Scientific #RM-9107-S), anti-human CD31 (1:10, Dako M0823), and anti-human IDO1 (1:200, Cell Signaling Technology). Density of IDO1+ cells was evaluated semiquantitatively by overall impression at low microscopic magnification (100×) within 1 mm2 and if any specific positive staining was identified it was judged present.
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