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26 protocols using bovine collagen type 1

1

Collagen Hydrogel Preparation for In Vivo Studies

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C16GSH stock solutions were prepared at 2 wt% in MilliQ water at pH 4 and sterilized by filtration through a 0.8/0.2 μm Supor® Membrane filter (Pall Life Sciences, Port Washington, NY). PA solutions were heated to 50°C and sonicated for 5 min to ensure complete dissolution. PA solutions were then cooled to room temperature and further diluted with MilliQ water to specified concentrations before use. For in vivo studies, C16GSH stock solutions were diluted to 2 and 0.2 wt% in water, raised to pH 6.5 using 1 M NaOH (Sigma Aldrich, Milwaukee, WI), and loaded into 1-mL sterile syringes. A buffer solution of 2×phosphate-buffered saline (PBS) was added and mixed thoroughly to achieve a concentration of 1 and 0.1 wt%, respectively, and a pH of 7.4.
Type I bovine collagen (Sigma Aldrich) was used as received (0.3 wt%). The manufacturer's instructions were followed for the gelling procedure. Briefly, the acidic collagen solution was mixed 8:1 with 10× PBS, and the pH was adjusted to 7.4 using 1 μL drops of 0.1 M NaOH. Collagen solutions were kept on ice before use to prevent gelation. Collagen solutions were gelled by incubation at 37°C for 1 h.
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2

Fabrication of Mineralized Collagen Scaffolds

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Mineralized collagen scaffolds were fabricated using previously described procedures.10,11,21,27,40–45 (link) In a cooled, jacketed vessel, 1.9 w/v% type I bovine collagen (Sigma-Aldrich, Missouri, USA), 0.84 w/v% chondroitin-6-sulfate (Sigma-Aldrich), and Ca(OH)2, H3PO4, and Ca(NO3)2·4H2O were thoroughly homogenized, making sure to prevent collagen clumping. The mineralized collagen suspension was transferred to 7.62 × 7.62 cm aluminum molds to create isotropic scaffolds. Alternatively, the suspension was pipetted into Teflon molds with a copper base to create anisotropic scaffolds.46 (link) The suspensions were cooled at a constant rate of 1 °C min−1 from 20 °C to −10 °C. Once frozen, the suspension was held at this temperature for 2 hours then lyophilized (0.2 torr pressure, 0 °C) in a VirTis Genesis 25XL Lyophilizer (SP Industries, Inc., Pennsylvania, USA).
Anisotropic mineralized collagen scaffolds with disparate GAG content were fabricated following the same method. However initial mineralized collagen suspensions were created using one of three potential glycosaminoglycans: chondroitin-6-sulfate (chondroitin sulfate sodium salt from shark cartilage, Sigma-Aldrich), chondroitin-4-sulfate (sodium chondroitin sulfate A, Toronto Research Chemicals Inc., Ontario, Canada), or heparin sulfate (Heparin sodium salt from porcine intestinal mucosa, Sigma-Aldrich).
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3

ECM Coating of Microfluidic Devices

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To produce ECM coatings on the COP devices, 15 µL of 0.26, 0.52, or 5.15 mg/mL Matrigel (Sigma-Aldrich, St. Louis, MO, USA), or 0.005%, 0.01%, or 0.1% (w/v) bovine collagen type I (Sigma-Aldrich) prepared in Dulbecco’s Modified Eagle medium (DMEM)/F12 (Sigma-Aldrich) was added to each microfluidic channel and incubated at 4 °C for more than 24 h. Excess Matrigel or collagen type I was removed, then the channels were washed with PBS.
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4

Hyaluronan-Gelatin Porous Scaffolds

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The sponge scaffolds were manufactured from 70% derivatized hyaluronan-ester and 30% gelatin as described previously [17 , 18 (link)]. The hyaluronan component was obtained from the commercially available product Jaloskin (Fidia Advanced Biopolymers, Abano Terme, Italy), which is manufactured from hyaluronate, highly esterified with benzyl alcohol on the free carboxyl groups of glucuronic acid along the polymer. The gelatin component was hydrolyzed bovine collagen type I (Sigma, Taufkirchen, Germany).
The porous scaffolds were manufactured by the solvent casting, particulate leaching technique, using NaCl with grain size of 250–350 μm as primary porogen. Additionally, the insufflating air which replaced the evaporating solvent generated secondary pores with the size of 50–100 μm. Scaffolds had a diameter of 2.2 mm and a height of 3 mm.
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5

Genotoxic Effect of Nanomaterials on Human Bronchial Epithelial Cells

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Human bronchial epithelial cells BEAS-2B (CRL-9609TM, ATCC®, Manassas, VA, USA) were used to evaluate the genotoxic effect of the selected NMs. The BEAS-2B cells represent an adherent cell line derived in 1988 from the lung autopsy of a healthy man [28 (link)]. The cells are non-tumour, immortalised by the hybrid Ad12-SV40 virus, with standard morphology and metabolism. The cells are pseudodiploid and stable under conditions defined by ATCC®.
The cultivation protocol recommended by ATCC® cells was used in this study, in order to ensure the reproducibility of the experiments. Briefly, cell cultivation surfaces were coated with a mixture of 0.01 mg/mL fibronectin (Sigma-Aldrich, St. Louis, MO, USA), 0.03 mg/mL bovine collagen type I (Sigma-Aldrich, St. Louis, MO, USA) and 0.01 mg/mL BSA (Sigma-Aldrich, St. Louis, MO, USA) dissolved in a bronchial epithelial basal medium (BEBM™, Lonza, Basel, Switzerland) and kept in a 37 °C incubator overnight. Before seeding the cells, all the coating media were removed. Serum-free cultivation conditions (BEGM™ kit CC3170) (Lonza, Basel, Switzerland) were used. For all the experiments, the confluence of the cells did not exceed 70% to avoid terminal squamous differentiation.
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6

Bovine Satellite Cell Isolation and Culture

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Dishes (Corning) were coated with 0.05% bovine collagen type I (Sigma, Cat# C4243). FACS isolated bovine satellite cells and unsorted cells were cultured on collagen-coated dishes in F10 medium (Gibco, Cat# 31550-023) containing 20% fetal bovine serum (FBS, Gibco, Cat# 10500-06), 5 ng/mL bFGF (R&D, Cat# 233-FB-025) and 1% P.S. Where indicated, medium was supplemented with p38i (SB203580, Selleck, Cat# S1076) and DMSO (Sigma, Cat# D8418). For serial expansion, cells were passaged to maintain a density of <60% confluence and counted at each passage. Bovine satellite cells differentiation was induced at 90% confluency with DMEM (Invitrogen, Cat# 41966-29) with 2% FBS. The expanded and differentiated cells were fixed with 4% PFA for immunofluorescent staining. The bright field images were acquired by AMG-EVOS microscope.
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7

Comprehensive Cell Culture Reagents

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Fetal bovine serum (FBS), Phosphate buffered saline (PBS), Dulbecco’s modified eagle medium (DMEM), penicillin, and streptomycin were purchased from Gibco. Bovine collagen type I, hydrocortisone, o-phosphatrolysine (OPS), adenine, progesterone, triiodothyronine, ITES, Gentamicin, brain heart infusion (BHI), and hematoxylin-eosin (H&E) were from Sigma-Aldrich. Newborn calf serum, HAM’s F12 medium, L-glutamine, TaqManTM Fast Advanced Master Mix, TaqManTM Microbe Detection assay against HSV-1, InsTAclone PCR cloning kit, pTZ57R/T plasmid, GeneJet Plasmid Miniprep Kit, poly-L-lysine coated glass slides, ProLong Antifade Mounting Medium with DAPI were obtained from ThermoFisher Scientific.
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8

Bovine Satellite Cell Culture Protocol

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96-well plates (Greiner Bio-one, Netherlands) and culture flasks (Thermo Fisher Scientific, Netherlands) were coated with 0.25 μg/cm2 bovine collagen type I (Sigma-Aldrich, Netherlands) and incubated for at least 1 h in a humidified incubator (37°C, 5% CO2). Prior to use, the plates and culture flasks were washed twice with PBS. After thawing, FACS sorted satellite cells were seeded at a minimum density of 1,800 cells/cm2 or higher densities as indicated. For serial passaging, cells were passaged to maintain a density of <80% confluence and counted at each passage. Where indicated, bovine satellite cell differentiation was induced when at 90%–95% confluence with DMEM (1 g/L glucose) + 2% FBS.
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9

Collagen Peptide Synthesis and Characterization

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Lyophilized peptides Fmoc-Phe-Phe-OH (Fmoc-Phe-Phe),
Fmoc-Gly-Pro-Hyp-OH (Fmoc-Gly-Pro-Hyp), and free H-Gly-Pro-Hyp-OH
were purchased from Bachem (Budendorf, Switzerland). Bovine collagen
type I was purchased from Sigma-Aldrich.
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10

Cultivation of Diverse Lung Epithelial Cell Lines

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Human lung epithelial A549 cells (Cat# 86012804-1VL, Sigma-Aldrich) and human distal lung epithelial H441 cells (Cat# ATCC-CRM-HTB-174D, LGC) were cultured in F-12K Nut Mix medium (Kaighn’s modification, Gibco) supplemented with 10% (v/v) artificial fetal calf serum (FCS) (HyClone FetalClone III serum, Cytiva). T7 mouse type-II alveolar epithelial cells (Cat# 07021402, ECACC) were cultured in F-12K Nut Mix medium supplemented with 5% (v/v) artificial FCS and with 0.5% (v/v) Insulin-Transferrin-Selenium (Thermo Fisher Scientific). BEAS-2B cells (Cat# CRL-9609, ATCC) were cultured in LHC-9 serum free medium (Thermo Fisher Scientific) in flasks precoated with LHC-9 medium supplemented with 0.01 mg/mL bovine fibronectin (Thermo Fisher Scientific), 0.03 mg/mL bovine collagen type I (Sigma-Aldrich) and 0.01 mg/mL BSA (Sigma-Aldrich). HepG2 cells (Cat# ACC 180, DSMZ) were cultured in RPMI-1640 medium supplemented with 10% (v/v) artificial FCS. A549 cells stably expressing Cas9 (Cat# SL504, GeneCopoiea) were cultured as mentioned above for A549 cells, but with addition of 800 μg/mL hygromycin (InvivoGen) as selection marker. The primary human airway epithelial (pAEC) cells (Cat# CC-2547, Lonza) were cultured in SAGM Small Airway Epithelial Cell Growth Medium BulletKit (Lonza). All cells were cultivated at 37°C and 5% (v/v) CO2.
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