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6 protocols using pd l1 29e 2a3

1

Vesicles Modulate Donor-Recipient DC Interactions

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Vesicles generated from prospective transplant donor PBMC were incubated with recipient-derived DCreg for 18–20 h (37°C; 5% CO2) at 10–50 μg vesicles per 105 DCreg. To examine their capture by DCreg, the vesicles were pre-labeled with the red membrane dye PKH26 (Sigma-Aldrich; PKH26GL), following the manufacturer’s protocol before incubation with the DCreg. Vesicle capture was then evaluated by flow cytometry.
To characterize the phenotype of DCreg loaded with donor-derived vesicles, the cells were stained with the following monoclonal antibodies (mAbs): APC-HLA-DR (G46-6), PerCP-Cy5.5-CD86 (FUN-1), V450-CD80 (L307.4), FITC-CD83 (HB15E) (all from BD Biosciences, San Jose, CA) and PE-Cy7-programed death-ligand (PD-L)1 (29E.2A3) (Biolegend, San Diego, CA), then analyzed by flow cytometry. For functional assessment, DCreg or control DC were cultured with autologous T cells at 1:40 ratio for 4–5 days. The cultures were then split; one half was used to measure T cell proliferation by 3H-thymidine incorporation and the other half rested for 3 days before re-stimulation with allogeneic PBMC from the same donor as the vesicles at 1:10 (PBMC:T cell) ratio for 3 days. Proliferation was measured by 3H-thymidine incorporation.
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2

Quantitative Analysis of PMN Activation

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Blood and airway PMNs collected from human subjects and from our transmigration model were assessed by flow cytometry using standard templates for staining, acquisition and analysis, as described, enabling quantitative comparison of in vivo and in vitro samples throughout the whole study [21 ]. Reagents used for the study included Live/Dead (Invitrogen), and antibodies against Arg1 (6G3, Hycult Biotech), as well as CD11b (M1/70), CD16 (3G8), CD41a (HIP8), CD45 (HI30), CD63 (H5C6), CD66b (G10F5), CD62L (DREG-56), and PD-L1 (29E.2A3) from BioLegend, and the ROS probe CellRox (ThermoFisher), using the gating strategy in Suppl. Fig. 1A. Phosphorylated 5’ adenosine monophosphate-activated protein kinase (AMPK) α1 levels were assessed using an antibody against phospho-Thr172 (Biorbyt) using a previously published protocol [7 (link)]. For Glut1 detection, we used a specific receptor-binding domain probe (Metafora Biosciences), as detailed before [10 (link)]. Data were acquired on a LSRII cytometer (BD Biosciences) and compensated, gated and analyzed in Flowjo (Treestar). Live PMNs were counted using CountBright beads (Life Technologies), and expression of all markers is reported as median fluorescence intensities.
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3

Multiparameter Flow Cytometry of Macaque Immune Cells

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The following fluorochrome conjugated monoclonal antibodies reactive with macaque cells were used for flow cytometry studies: CD3 (SP34-2, BD Biosciences [BD]), CD4 (L200, BD), CD8 (SK1, BD), CD95 (DX2, BD), CD28 (CD28.2, BioLegend), CCR5 (3A9, BD), CXCR5 (MU5UBEE, Invitrogen), PD-1 (EH12.2H7, BioLegend), ICOS (C398.4A, BioLegend), CCR7 (150503, BD), α4β7 (A4B7, NHP Reagent Resource), LAG3 (3DS223H, eBioscience), Tim-3 (F38-2E2, BioLegend), TIGIT (MBSA43, Invitrogen), CD20 (2H7, BioLegend), CD19 (J3-119, Beckman Coulter), HLA-DR (L243, BioLegend), CD10 (HI10A, BioLegend), CD21 (B-ly4, BD), CD27 (O323, BioLegend), IgD (IADB6, Southern Biotech), IgG (G18-145, BD), IL-21R (2G1-K12, BioLegend), Ki-67 (B56, BD), BCL6 (IG191E/A8, BioLegend), CD80 (2D10, BioLegend), CD56 (B159, BD), CD45 (D058-1283, BD), CD14 (MoP9, BD), CD16 (3G8, BD), CCR2 (48607, R&D Systems), CD11b (ICRF44, BioLegend), CD11c (3.9, Invitrogen), PD-L1 (29E.2A3, BioLegend), PD-L2 (24F.10C12, BioLegend), CD80 (2D10, BioLegend), CD86 (FUN-1, BD), CD141 (1A4, BD), CD163 (GHI/61, BioLegend), and CD123 (7G3, BD).
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4

Multiparametric Flow Cytometry of Immune Cells

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Blood and airway cell staining (in their native state or upon in vitro incubation with agents to induce granule exocytosis), flow cytometric acquisition and analysis were performed as described (8 (link)). As illustrated in Figure S1A and S1B, live PMNs were analyzed using Live/Dead (Invitrogen), and antibodies against CD15 (W6D3), CD16 (3G8), CD35 (E11), CD41a (HIP8), CD45 (HI30), CD63 (H5C6), CD66b (G10F5), and PD-L1 (29E.2A3), from BioLegend, and Arg1 (6G3, Hycult Biotech). Data were acquired on a LSRII flow cytometer (BD Biosciences), analyzed with Flowjo (Treestar) and reported as median fluorescence intensity (MFI).
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5

Meningioma single-cell characterization

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Cryo-preserved meningioma single-cell suspensions were thawed at room temperature. The tumor suspensions were incubated on ice with anti-biotin microbeads (Miltenyi) and run through a magnetic column to remove excess debris from the cell slurry. The cells were split and stained with fluorochrome-labeled mAbs for CD33 (WM53, BD Biosciences), CD45 (HI30, BioLegend, PD-L1 (29E.2A3, Biolegend) or an isotype control (mouse IgG2b, BioLegend) and fixed in 4% paraformaldehyde. Samples were run on either a FACSCalibur™ or FACSAria™ II (BD Biosciences) with CellQuest software and analyzed using FlowJo software (Tree Star).
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6

Multiparametric Flow Cytometry for Immune Profiling

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Flow cytometry for surface and intracellular staining was performed using standard protocols (19 (link)). Cells were stained with: CD3 (SP34), CD4 (SK3), CD8 (SK1), CD20 (2H7), IL-21 (3AS-N2)(all from BD Biosciences Pharmingen, San Diego, CA), CXCR5 (MU5UBEE, eBioscience), PD-1 (EH12.2H7, BioLegend), PD-L1 (29E.2A3, BioLegend), PD-L2 (24F.10C12, BioLegend), HLA-DR (Immu-357, Beckman Coulter, Brea, CA), Ki67 (B56), Annexin V, and LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (Invitrogen, Grand Island, NY). For intracellular IL-21 detection, lymphocytes (106) from lymph nodes were stimulated in vitro for 4 hours with 0.1μM phorbol 12-myristate-13-acetate (PMA) and, 0.5μg/ml ionomycin (Sigma-Aldrich, St. Louis, MO) in presence of 5μg/ml Brefeldin A. Cells were then stained for their surface markers, or further examined by intracellular molecules (IL-21). Isotype-matched controls were included in all experiments. Samples were resuspended in BD Stabilizing Fixative (BD Biosciences) and acquired on a FACS FORTESSA (Becton Dickinson, San Jose, CA). Data were analyzed with Flowjo software (Tree Star, Ashland, OR).
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