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14 protocols using okadaic acid

1

Investigating Foxp3 Regulation by NLK

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The following antibodies were used: rat anti-Foxp3 clone PCH101 and mouse anti-Foxp3 clone eBio7979 (eBioscience), mouse anti-Flag (Sigma-Aldrich), mouse anti-hemaglutinin (HA) clone 12CAS, rabbit anti-NLK (H-100) and goat anti-Actin (I-19) (Santa Cruz Biotechnology), and anti-HSP90 was purchased from Professor Ineke Braakman (UMC Utrecht, Utrecht, the Netherlands).
The following reagents were used: Phos-tag™ Acrylamide (WAKO Chemicals GmbH), Okadaic acid, SB203580">SB203580, SP600125">SP600125, U-0126 and Rapamycin (Enzo Lifesciences), PKB inhibitor VIII (Calbiochem), 5Z-7-Oxozeaenol and BIO (Tocris Bioscience, Bristol, United Kingdom, λPPAse (New England BioLabs) and recombinant GST-NLK active protein (Sigma-Aldrich).
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2

Preparation and Characterization of Compounds

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We obtained iHAP1 from Enamine (Cat#: Z56843374) and DT‐061 (Cat#: HY‐112929) from either MedChemExpress or as a gift from Goutham Narla. Perphenazine was purchased from Sigma‐Aldrich/Merk (Cat#P6402). Okadaic acid was bought from Enzo Life Sciences (Cat#ALX‐350‐003). Compounds were dissolved according to instructions and stored as single‐use aliquots. Their identity was confirmed by mass spectrometry.
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3

Pharmacological Inhibition Assays

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Rapamycin (Cat. No. tlrl-rap, InvivoGen), PF-470867 (Symansis), Bisindolylmaleimide V (B5) (Cat. No. ALX-270-053, Enzo Life Sciences), and okadaic acid (Cat. No. ICN15897310, MP Biomedicals) were used as indicated in the text. okadaic acid was dissolved in ethanol (vehicle 2) for N2a cell culture experiments and DMSO when used to supplement lysis buffers. (S)-DHPG was purchased from Tocris and diluted in water.
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4

Synthesis and Evaluation of Novel Compounds

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Hydroxyurea, 5-Fluorouracil, cantharidin and propidium iodide were purchased from Sigma-Aldrich; MS-275, KU-60019, MK-8776, LY2603618, LBH589 and VE-821 from Selleck Chemicals; okadaic acid was purchased from Enzo Life Sciences; Annexin-V-FITC-conjugated was from ImmunoTools. Fmoc-protected amino acids and coupling reagents (HBTU, HOBt) were purchased from Novabiochem, Iris Biotech GmbH and Orpegen Pharma GmbH, respectively. Reagents for synthesis and solvents for chromatography (analytical grade) were from VWR International GmbH.
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5

Purified Human Serum IgA Assay

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Purified human serum IgA (>20 mg/ml) was obtained from Cappel (Malvern, PA). It contained no detectable trace of IgG, IgM, or non-immunoglobulin serum proteins. Recombinant mouse IL-3 was produced in COS cells (25 (link)). Ultra-pure fibrinogen (Fib3) and human alpha thrombin was purchased from Enzyme Research Laboratories (Swansea, UK). Pharmacological inhibitors LY294002, SB216763 were purchased from BioMol (Plymouth Meeting, PA). PKB inhibitor 1L-6-Hydroxymethyl-chiro-inositol 2-(R)-2-O-methyl-3-O-octadecylcarbonate was obtained from Calbiochem (San Diego, CA), the GSK-3α/β inhibitor CHIR-99021 from Selleckchem and okadaic acid from Enzo Life Sciences. The PKCζ pseudo-substrate was purchased from Biosource (Camarillo, CA) or Santa Cruz biotechnology. Recombinant human GM-CSF (rhGM-CSF) was from Immunotools. PI-3 kinase construct p110-K227E was a kind gift of Dr. J. Downward (ICRF, London, UK). G418 and hygromycin B were purchased from Boehringer Mannheim (Germany). Incubation buffer contained 20 mM HEPES, 132 mM NaCl, 6 mM KCl, 1 mM MgSO4, 1.2 mM KH2PO4, supplemented with 5 mM glucose, 1 mM CaCl2, and 0.5% (w/v) HSA. All other materials were reagent grade.
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6

Cytotoxicity and DNA Damage Assays

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Acrylamide (99%; for molecular biology), alternariol (96%; from Alternaria sp.), and doxorubicin hydrochloride were purchased from Sigma-Aldrich (St. Louis, MO, USA), while okadaic acid was acquired from Enzo Biochem Inc. (New York, NY, USA). For cell culture experiments, RPMI (Roswell Park Memorial Institute, Buffalo, NY, USA) 1640 medium, heat-inactivated fetal bovine serum, and penicillin/streptomycin (P/S) solution were purchased from Thermo Fisher Scientific Inc. (Waltham, MA, USA). For the cell viability assay, the CellTiter-Blue® Cell Viability reagent was purchased from Promega Corporation (Fitchburg, MA, USA). The 4′,6-diamidine-2′-phenylindoledihydrochloride (DAPI), Alexa Fluor ™ 633 F(ab’)2 fragment of goat anti-mouse IgG (H+L), bovine serum albumin (BSA; Standard Grade Powder, Fraction V), and S9 fraction (20 mg/mL from liver of Sprague Dawley rats), which were used for the γH2AX assay, were purchased from Thermo Fisher Scientific Inc. (Waltham, MA, USA). Anti-phospho-Histone H2A.X (Ser139) Antibody (clone JBW301) and glucose-6-phosphate di-sodium salt were purchased from Sigma-Aldrich Corporation (St. Louis, MO, USA), while nicotinamide adenine dinucleotide phosphate (NADP) was purchased from Merck KGaA (Darmstadt, Germany).
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7

Quantitative Analysis of Microcystins

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MC-LR and MC-RR certified standards, the anti-adda antibody (AD4G2), and the assay kit for detection of MCs/NOD in water by PP2A were purchased from Abraxis, Inc (Warminster, PA, USA). MC-LF, NOD, cantharidin, okadaic acid, and calyculin A standard were purchased from Enzo (Farmingdale, NY, USA). Norcantharidin and phosphate buffered saline, pH 7.4 with Tween 20 (PBS-T) were obtained from Sigma-Aldrich (St. Louis, MO, USA). All MCs and other PP2A inhibitors were stored at −20 °C. The antibody was stored at 4 °C. Acetonitrile was from Pharmaco (Dawsonville, GA, USA). Methanol and formic acid were obtained from Fisher Scientific (Waltham, MA, USA). Life Technologies Corporation (Grand Island, NY, USA) supplied the Dynabeads MyOne Streptavidin T1, Zebaspin 7K molecular weight cut off, 0.5 mL desalting columns, and EZ-link NHS-PEG4-biotin. The Thermomixer C, Protein LoBind 2 mL microcentrifuge tubes, Protein LoBind 1 mL deep well plates, and TwinTec Lo-Bind PCR plates were purchased from Eppendorf (Hauppage, NY, USA). V&P Scientific (San Diego, CA, USA) supplied the 96-well plate magnet (part number VP771HH-MC). The microcentrifuge tube magnet was purchased from Invitrogen (Waltham, MA, USA).
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8

Protein Phosphatase Inhibitor Effects

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Protein phosphatase inhibitors calyculin A (Abcam), okadaic acid (Enzo) and rubratoxin A (Abcam) were dissolved in DMSO. In all infectivity experiments, cells were treated with the desired drug concentration 6 h before infection (or DMSO as a negative control), and medium was changed 24 h after treatment.
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9

Mitotic HeLa Cell Lysate Preparation

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HeLa cells were cultured in DMEM (Corning), 10% fetal bovine serum (Life Technologies), and 1% 100× penicillin/streptomycin solution (Corning) at 37°C, 5% CO2, and 85% relative humidity. Mitotic HeLa lysates were prepared by dosing cells at ∼70–80% confluency for 16 h with 3 μM STLC and then isolating mitotic cells via vigorous shake-off. The mitotic cells were washed three times with cold PBS (Corning) supplemented with STLC. After the removal of the final wash, protease inhibitors (leupeptin, pepstatin A, and chymostatin, 10 μg each as a 10 mg/ml mixture of all three in dimethyl sulfoxide [DMSO]), cytochalasin D (10 μg from a 10 mg/ml solution in DMSO), and nocodazole (7.5 μg as a 25 mM solution in DMSO) were added to the pellet, which was subsequently frozen in liquid nitrogen and thawed at room temperature three times to lyse cells. The lysate was then spun at 20,000 × g for 30 min at 4°C and the supernatant immediately used in experiments. For cells treated with okadaic acid (1 μM; Enzo) or barasertib (1 μM; ApexBio), the drug was added to the final wash of the cells and also just before lysis after removal of the final PBS wash.
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10

Phosphoprotein Enrichment and Immunoblotting Protocol

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F12 and F12 (Coon’s modification) medium, latrunculin B, anti-α-tubulin mouse monoclonal antibodies (DM1A, Cat. no. T9026, lot no. 052M4837) and HRP-conjugated secondary antibodies were purchased from Sigma-Aldrich (St. Louis, MO). Lactacystin and okadaic acid were purchased from Enzo (Farmingdale, NY). Phosphoseek™ Phosphoprotein Enrichment kits were purchased from BioVision (Milipitas, CA). Mouse monoclonal antibodies against the V5 epitope tag (clone: SV5-Pk1, cat. no. MCA1360GA) were from AbD Serotec (Raleigh, NC) and rabbit monoclonal antibodies against WDR1 (Cat. No. EPR8793) were from AbCam (San Francisco, CA) or Santa Cruz (Dallas, TX) (Cat. No. B10). Mouse monoclonal antibodies against phospho-threonine (Q7, Cat. no. 1018223) and phospho-serine (Q5, Cat. no. 1018234) residues were purchased from Qiagen (Valencia, CA). Fetal bovine serum (FBS) was from Gemini Bio-Products (Woodland, CA). Polyclonal rabbit antibodies against rat serum albumin were generously provided by Dr. Ann Hubbard (Johns Hopkins University School of Medicine, Baltimore, MD).
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