The largest database of trusted experimental protocols

7 protocols using ripa lysis buffer

1

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIPA Lysis Buffer (HY-K1001, MedChem Express) was used to separate total protein in cells. The protein was transferred onto PVDF membranes (Millipore, MA), which were then blocked with skim milk for 1 h at room temperature. Else, the primary antibodies (anti-GAPDH, anti-E-cadherin, anti-N-cadherin, anti-PDCD4) were added for overnight incubation, followed by HRP-conjugated secondary antibody. Protein bands were analyzed by the ImageJ software.
+ Open protocol
+ Expand
2

Protein Expression Analysis of Cancer Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
With the application of RIPA lysis buffer (MedChemExpress, USA) and BCA Protein Assay Kit (Beyotime, Shanghai, China), the collection and quantification of total protein were successively performed. The protein samples were adjusted to the same amount (30 µg/lane) and subjected to 10% SDS-PAGE. The proteins were transferred to the membranes which were then immersed in 5% BSA and treated with primary antibodies against AKR1B10 (cat. no. ab192865; 1/1000; Abcam), HK2 (cat. no. ab209847; 1/1000; Abcam), matrix metallopeptidase 2 (MMP2; cat. no. ab181286; 1/1000; Abcam), matrix metallopeptidase 9 (MMP9; cat. no. ab76003; 1/1000; Abcam), Vimentin (cat. no. ab16700; 1/1000; Abcam), Slug (cat. no. ab302780; 1/1000; Abcam), pyruvate kinase M2 (PKM2; cat. no. ab85555; 1/1000; Abcam), lactate dehydrogenase A (LDHA; cat. no. ab52488; 1/5000; Abcam), E-cadherin (E-cad; cat. no. 20874-1-AP; 1/10000; Proteintech), N-cadherin (N-cad; cat. no. A0433; 1/1000; ABclonal) and β-actin (cat. no. ab8227; 1/5000; Abcam) at 4 °C overnight. Then, these membranes were incubated with HRP‐conjugated secondary antibody (cat. no. ab205718; 1/2000; Abcam) for 1 h. The bands were visualized using an ECL detection reagent (Millipore, Burlington, MA, USA). Densitometry analysis was conducted using ImageJ software (version 1.49; National Institutes of Health).
+ Open protocol
+ Expand
3

Measuring Protein Expression and Stability

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression of target proteins was measured by standard Western blot as previously described.59 (link) Cells were lysed by RIPA lysis buffer (Cell Signal Technology, Beverly, MA), and protein concentration was measured by bicinchoninic acid (BCA) assay (CWBIO, China). For p53 acetylation analysis, cells were treated with or without Doxorubicin (Dox, Selleck, Houston, TX) at concentrations of 1 μM for 2 h. For protein stability analysis, cells were treated with cycloheximide (CHX, 20 μg/mL; Sigma-Aldrich, St Louis, MO) for the indicated times to block protein synthesis. Cell lysates were performed by standard Western blot assay with the indicated antibodies to detect the target proteins degradation. For protein solution assay, cells were treated with ReAcp53 (MedChemExpress, New Jersey, NJ) at concentrations of 5 μM for 16–20 h.34 (link) Cell pellets were washed twice with PBS and lysed in RIPA lysis buffer supplemented with phosphatase inhibitors for 30 min on ice. Soluble supernatant and insoluble precipitation of lysates were obtained by centrifugation (12, 000 rpm) at 4°C. All lysates were diluted in loading buffer and denatured by heating at 100°C. The prepared samples were analyzed by Western blot. Antibodies used to determine the indicated proteins are shown in key resources table.
+ Open protocol
+ Expand
4

Quantitative Protein Analysis of Metastatic Liver Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from metastatic liver tissue or cell lines with or without CXCL12 (cat. no. ab259416; 100 ng/ml, Abcam) using RIPA lysis buffer (MedChemExpress, Inc.), according to the manufacturer's protocol. Total protein was quantified using a BCA Protein Quantification kit (Pierce; Thermo Fisher Scientific, Inc.) and proteins (20 µg/lane) were separated via SDS-PAGE on a 10% gel. The separated proteins were subsequently transferred onto NC membranes (EMD Millipore) and blocked with 1% BSA (Thermo Scientific, Inc.) for 1 h at room temperature. The membranes were then incubated with rabbit anti-MTSS1 (cat. no. ab204127; 1:500), anti-Rac (cat. no. ab180683; 1:2,000, anti-CDC42 (cat. no. ab187643; 1:20,000) and anti-GAPDH (cat. no. ab8245; 1:10,000) (all from Abcam) primary antibodies at 4°C overnight. Following primary antibody incubation, the membranes were incubated with a horseradish peroxidase conjugated anti-rabbit secondary antibody (cat. no. ab97051; 1:20,000, Abcam) for 1 h at room temperature. Protein bands were visualized using an enhanced chemiluminescence system (Amersham, Cytiva, Inc.), according to the manufacturer's protocol, on an Odyssey scanner (LI-COR Biosciences, Inc.). Densitometric analysis was performed using ImageJ software V1.8.0 (National Institutes of Health).
+ Open protocol
+ Expand
5

GRAP2 Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
LUAD cells were lysed using RIPA lysis buffer (MedchemExpress, China). The protein lysate was separated via SDS–PAGE (Invitrogen) and transferred to PVDF membranes (Millipore, USA) for analysis.21 The membranes were incubated with anti‐GRAP2 (1:2000 dilution, Cambridge, MA, USA, ab224613) and anti‐GAPDH (1:5000 dilution, Proteintech, China, 60,004‐1‐Ig) antibodies at 4°C overnight and then with HRP‐labeled secondary antibody (1:2000 dilution, Beyotime, China, A0181) at room temperature for 2 h. Western blotting results were analyzed with ImageJ software.
+ Open protocol
+ Expand
6

Lycium barbarum Polysaccharide-Mediated Autophagy Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols

Lycium barbarum polysaccharide powder, 50% purity (P7850, Beijing Solarbio Life Sciences Co., Ltd.), Hematoxylin and Eosin Staining Kit (G1315-500ml, Beijing Solarbio Science & Technology Co., Ltd.), Annexin V-APC Apoptosis Detection Kit (P-CA-207, Procell), CM-H2DCFDA (C6827, Invitrogen), EDTA (324504, Millipore), TRIzol (15596026, Thermo), methylene-bis-acrylamide (146072, Sigma), Tris (T1503, Sigma), glycine (G8790, Sigma), diethyl pyrocarbonate (683520, Sigma), DMEM/F12 (SLM-243-B, Sigma), skimmed milk powder (P1622, Applygen Technologies Inc.), protease inhibitor (P1265, Applygen Technologies Inc.), protein phosphatase inhibitor (P1260, Applygen Technologies Inc.), 6X sample buffer (CW0610, Cowin Bio), RIPA lysis buffer (HY-K1001, MedChemExpress), CCK8 assay kit (ab228554, abcam), mRNA reverse transcription kit (CW2569, Cowin Bio), miRNA reverse transcription kit (CW2141, Cowin Bio), UltraSYBR Mixture (CW2601, Cowin Bio), Bcl-2 antibody (12789-1-AP, Proteintech), Beclin1 antibody (bs-1353R, BiOSS), LC3A/B antibody (bs-8878R, BiOSS), Atg5 antibody (10181-2-AP, Proteintech), β-actin antibody (66009-1-Ig, Proteintech), HRP goat anti-mouse IgG (SA00001-1, Proteintech), HRP goat anti-rabbit IgG (SA00001-2, Proteintech), miR-181a mimic, miR-181a inhibitor, and noncoding RNA (NC) were purchased from Shanghai Jikai Gene.
+ Open protocol
+ Expand
7

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was performed using standard methods (16 (link)). Proteins were extracted from tissues and cells using RIPA Lysis Buffer (MedChemExpress). Briefly, 50 µg protein/lane was separated by SDS-PAGE on 12.5% gels and transferred to polyvinylidene fluoride membranes. The membranes were blocked with 5% BSA for 2 h at room temperature and then incubated with primary antibodies (1:2,000) at 4°C overnight. Subsequently, the membranes were incubated with the corresponding secondary antibody Goat Anti-Rabbit IgG H&L (HRP) (1:10,000; ab6721; Abcam) at room temperature for 1 h and the protein bands were visualized using an enhanced chemiluminescence detection system (Amersham; Cytiva). ImageJ (version 1.8.0; National Institutes of Health) was used for semi-quantification.
NE-PER Nuclear Extraction Reagent (Thermo Fisher Scientific, Inc.) was used to isolate and extract nuclear proteins, respectively. Specific detailed steps were performed as described previously (17 (link)).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!