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40 protocols using c0130

1

Isolation and Culture of Adipose-Derived Stem Cells

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Adipose tissue was surgically attained from the inguinal and epididymal fat pads and
sliced into small pieces. The adipose tissues were digested with DMEM-HG medium (BI-1001,
Bioidea, Iran) containing 0.1% collagenase type 1 (C0130, Sigma-Aldrich, USA) and 1%
penicillin/ streptomycin (BI-1230, Bioidea, Iran) for 40 minutes at 37o C in a shaking
bath. Collagenase was neutralized by adding DMEM-HG containing 10% fetal bovine serum
(FBS, BI-1201, Bioidea, Iran) and centrifuged at 1200 × rpm for 7 minutes to obtain a
pellet. The supernatant was removed and precipitated cells were re-suspended in the
DMEM-HG medium containing 15% FBS and1% penicillin/ streptomycin (BI-1230, Bioidea, Iran)
and seeded in 25 cm2 culture flask and incubated at 37 ° C with 5%
CO2 . The residual non-adherent red blood cells were removed by washing with
the DMEM-HG medium. The medium was changed every 3 days and after the cells reached the
third passage, the cells were passaged using 0.25% trypsin-EDTA (BI-1602, Bioidea, Iran).
The cells in the third passage were used for the next steps of the experiment.
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2

Isolation and Characterization of Corneal Endothelial Cells

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Rabbit eyeballs were purchased from Visiontech Inc. (Sunnyvale, TX, USA). To isolate the CECs, Descemet’s membrane was separated and placed in a 2 mg/mL collagenase (C0130, Sigma Aldrich) solution to incubate at 37 °C for 1 h. It was centrifuged at 1000× g rpm for 3 min and resuspended with FNC coating mix, Opti-MEM, and supplements (11058021, Gibco). To analyze the elongation ratio of the PrCECs, we drew horizontal and vertical lines meeting perpendicularly within the cell membrane and compared the length ratios of these two lines. To culture the CECs on top of the gelNF membrane, the cells were seeded at a density of 8 × 104 cm2. A phase-contrast microscope (EVOS, Thermo Fisher Scientific) was used for the analysis of the morphology of the CECs.
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3

Establishing Soft Tissue Sarcoma Cell Lines

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Fresh tumors were minced into small fragments and digested with 100 U·mL−1 collagenase (C0130; Sigma‐Aldrich, Burlington, MA, USA) and 1 U·mL−1 dispase (LS02100; Worthington Corporations, Lakewood, NJ, USA) in DMEM medium supplemented with 10% FBS and 100 μg·mL−1 Penicillin/Streptomycin (BioWest, Nuaillé, France). After 18 h of incubation, digested tissue was filtered through a 40 μm filter to seed single cells in 6‐well plates. Cell lines were initially maintained for 10 passages at 37 °C and 10% CO2. Subsequently, cells were cultured at 5% CO2. In this work, the following established cell lines were also used: NF1‐derived 88‐14 (RRID: CVCL_8916) [35 (link)] and S462 (RRID: CVCL_1Y70) [36 (link)], and sporadic STS‐26T (RRID: CVCL_8917) [37 (link)]. All details regarding these three cell lines, as well as the laboratories originating and providing these cell lines, are described in Magallón‐Lorenz et al. [38 (link)]. Cell lines were validated as Mycoplasma negative and were retested every 2 months. Cell lines have been authenticated in the past 3 years by performing short tandem repeat (STR) profile authentication.
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4

Isolation and Culture of Porcine Chondrocytes

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The isolation and use of porcine chondrocytes were approved by the Animal Experimentation Ethics Committee of National Taiwan University Hospital. Fresh porcine stifles were purchased from a traditional market and kept integrated till chondrocytes were isolated under aseptic conditions. A total of 12 porcine stifles were used for all experiments. Porcine chondrocytes were isolated from macroscopically normal cartilage of the femoral condyles [28 (link)]. Finely diced cartilage pieces were treated with 10% antibiotics (15240-062, Gibco, USA) in phosphate buffered saline (PBS) at 37 °C for 10 min, then re-suspended in Dulbecco’s modified eagle’s medium (DMEM; D5648, Sigma, USA) containing 10% fetal bovine serum (12003C, SAFC, USA), 1% penicillin and 0.05% L-Ascorbic acid (A5960, Sigma, USA) and 0.2% collagenase (C0130, Sigma, USA) at 37 °C for 18 h. Chondrocytes were then collected and washed twice with PBS, and cultured in DMEM. Chondrocytes with a passage number of 2 to 4 were used in all experiments.
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5

Stromal Vascular Fraction Isolation

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SVF cells were obtained by collagenase digestion of adipose tissue fragments in Dulbecco’s Modified Eagle’s Medium (DMEM)-Ham’s F12 with Collagenase 11 (Sigma Aldrich C7657, 0.0875 mg/ml), collagenase 1 (Sigma Aldrich C0130, 1.216 mg/ml) and DNAse 1 (Sigma Aldrich DN25, 0.09 mg/ml) under gentle shaking (60 cycles/min) at 37 °C. The resulting suspension was filtered through a 200 μm filter and fat cells were removed as floating fraction after centrifugation (5 min, 1250 rpm). SVF cells were washed once with DMEM-Ham’s F12 to eliminate collagenase, filtered through a 70 μM filter and stained for flow cytometry.
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6

Isolation and Preparation of Adipose-Derived SVF

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Human adipose tissue was washed with PBS to remove blood cells. After the washed tissue was chopped with scissors, it was incubated with 0.1% collagenase solution (C0130; Sigma-Aldrich) at 37°C for 1–2 h to completely dissolve the tissue. The incubated cells were centrifuged at 400 × g for 3 min, and half of the supernatant was removed except for the pellet. The remaining supernatant containing the pellet was filtered using a cell strainer (352,360; Falcon) and transferred to a new tube. The collagenase was inactivated by adding an equal amount of 10% FBS (in DMEM containing 1% P/S). The treated cells were centrifuged at 400 × g for 30 min and the supernatant was removed; the pellets was resuspended in 10 ml of DMEM and the cells were counted. SVF was prepared for treatment with PBS (3 × 105 cells/20 μL PBS).
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7

Flow Cytometric Analysis of Aortic Inflammatory Cells

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Freshly isolated aortas were resuspended in FACS buffer (PBS containing 1% FBS and 2 mM EDTA) and stained with conjugated antibody for 20 to 30 min at 4 °C. Cells were washed and resuspended in FACS buffer for flow cytometric analyses in which inflammatory cell populations were designated, following gating/stratification of their marker profile. The aortas were cut into small pieces and digested in an enzyme mixture containing 450 U/mL collagenase I (C0130, Sigma‒Aldrich), 125 U/mL collagenase XI (C7657, Sigma‒Aldrich), 60 U DNase I (DN25, Sigma‒Aldrich), and 60 U/mL hyaluronidase (2592, Worthington Laboratories) in PBS with Ca2+/Mg2+ for 60 min at 37 °C with gentle shaking. After incubation, the digestion mixture was homogenized through a 70-μm nylon mesh. The digestion mixture was centrifuged at 2000 rpm for 15 min at 4 °C, and the cells were simultaneously stained with antibodies at 4 °C for 15 min and then washed and resuspended in a staining buffer. All antibodies are listed in Supplementary Table 3. The cell suspensions were analyzed with a BD FACSCANTO II flow cytometry system (BD Biosciences), and postacquisition analysis was performed with FlowJo7 software (Tree Star).
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8

Isolation and Culture of Vaginal Epithelial Cells

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Female SD rats were euthanatized by CO2 asphyxia and the freshly excised vaginal tissues were washed and cut into small pieces under antiseptic conditions. The finely minced tissues were subsequently digested enzymatically twice (1 h for each time) with type I collagenase (0.5 mg/mL, C0130, Sigma-Aldrich, USA) dissolved in DMEM/F12 (Gibco, USA) at 37°C, with gentle agitation. The digested tissues were further dissociated and dispersed by repeatedly pipetting and centrifuged at 500 g for 30 s. Afterward, the isolated cell clusters were resuspended and washed twice with DMEM/F12 (Gibco, USA) medium containing 10% FBS (Gibco, USA). The fragments were collected and placed in the six-well plate, then humidified in keratinocyte serum-free medium (K-SFM, Gibco, USA) supplemented with bovine pituitary extract (50 μg/mL, Gibco, USA), recombinant epidermal growth factor (5 ng/mL, Gibco, USA), 100× insulin-transferrin-selenium solution (1×, Gibco, USA), cholera toxin (Sigma Aldrich, USA) and penicillin/streptomycin (100 U/mL/100 μg/mL, Hyclone, USA), in an atmosphere of 5% CO2 at 37°C. After 24 h, the fragments were washed and cells were cultured with the supplemented K-SFM medium. On day 5, the cells were used for immunofluorescence staining or incubated with live T. vaginalis (1×106) for Western blot assay.
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9

Isolation and Culture of Murine Vascular Smooth Muscle Cells

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Primary VSMCs were obtained from 6 to 8-week-old C57BL/6 male mouse aortas using collagenase-elastase digestion as follows: aortas were excised, washed in phosphatebuffered saline, and incubated in DMEM (Invitrogen) containing 1 mg/mL of Collagenase type II (LS004176, Worthington Biochemical Corp) for 10 to 15 min. Then, under microscopic guidance, the vessels were stripped of adventitia, minced with scissors and digested with Collagenase type I (C-0130, Sigma) 0.5 mg/mL and Elastase type III (E−0127, Sigma) 0.125 mg/mL in serum-free DMEM with antibiotics at 37°C until most cells were in suspension. The cell suspension was recovered and centrifuged at 400 g for 5 min, then resuspended in DMEM with 20% fetal bovine serum (FBS, HyClone), 2% penicillin–streptomycin, and cultured in plates. The cells used in the experiments were from passages 3 to 5.
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10

Isolation and Immunolabeling of Single Muscle Fibers

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Single myofibres were isolated from Extensor digitorum longus (EDL) muscles as previously described34 (link). EDL muscles were dissected and incubated in 0.1% w/v collagenase (Sigma, C0130) in DMEM for 1 h in a 37 °C shaking water bath at 40 rpm. Following enzymatic digestion, mechanical dissociation was performed to release individual myofibres that were then fixed in 4% paraformaldehyde (PFA, Electron Microscopy Sciences) for 5 min at RT, washed three times 10 min with PBS, permeabilised in 0.5% Triton X-100 (Sigma) for 5 min at RT, washed three times 10 min with PBS, blocked in 10% normal donkey serum (DS, Abcam, ab7475) for 1 h at RT, incubated with chicken anti-GFP antibody (1/1000, Abcam, ab13970) and mouse anti-M-Cadherin antibody (1/50, Nanotools, clone 12G4) or goat anti-ItgB1 antibody (1/100, SantaCruz, sc-9936) in 2% DS overnight at 4 °C, washed four times 10 min in PBS at RT, incubated with anti-chicken AlexaFluor 488 (1/500, ThermoFisher, A-11039) and anti-mouse Cy3 antibody (1/500, Jackson ImmunoResearch, 115-165-205) or anti-goat DyLight 550 (1/500, Diagomics, DKXGT-003) and Hoechst (1 µg/ml) in 2% DS for 45 min at RT, washed four times 10 min with PBS and mounted in PBS/Glycerol 75%. Images were taken with a Zeiss LSM800 confocal (×40 objective) and processed with Imaris 7.2.1 software (Bitplane).
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