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Ls 50b spectrofluorometer

Manufactured by PerkinElmer
Sourced in United States

The LS-50B spectrofluorometer is a versatile instrument designed for fluorescence analysis. It is capable of measuring the fluorescent properties of a wide range of samples, including organic compounds, biological materials, and environmental samples. The LS-50B provides accurate and reliable data, making it a valuable tool for various research and analytical applications.

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45 protocols using ls 50b spectrofluorometer

1

Quantifying Olive Pollen Calcium Levels

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Intracellular calcium levels were determined spectrofluorometrically using a FURA-2AM probe (Koubouris et al., 2009 (link)). For this, 100 mg of olive pollen was suspended in 10 ml PBS and hydrated for 3 days.
Hydrated pollens were harvested by centrifugation at 1,000 g x 4 min and then resuspended in 2 ml Ca2+-free HBSS buffer (120 mM NaCl, 5.0 mM KCl, MgCl2 1mM, 5 mM glucose, 25 mM Hepes, pH 7.4). Pollen suspensions were incubated in the dark with FURA-2 (2 µl of a 2 mM solution in DMSO) for 120 min, after which the samples were centrifuged at 1,000 g x 4 min. Pollens were then harvested and suspended in ~10 ml of Ca2+-free HBSS containing 0.1 mM EGTA, which was included to rule out or, at least, minimize a potential background due to contaminating ions (to obtain a suspension of 1 x 106 of pollen granules hydrated per ml).
Fluorescence was measured in a Perkin-Elmer LS 50 B spectrofluorometer (ex. 340 and 380 nm, em. 510 nm), set with a 10-nm and a 7.5-nm slit width in the excitation and emission windows, respectively. Fluorometric readings were normally taken after 300–350 s. When required, samples of pollen, CaCl2, H2O2, and Na2SeO4 were added for specific purposes, as described in the Results section.
Cytosolic calcium concentrations [Ca2+]c were calculated as shown by Grynkiewicz (Koubouris et al., 2009 (link)).
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2

Fluorescence Anisotropy of Membrane Probes

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The fluorescence anisotropy of two fluorescent probes, DPH (1,6-diphenyl-1,3,5-hexatriene) and TMA-DPH (1-[4-(trimethyl-ammonium) phenyl]-6-phenyl-1,3,5-hexatriene), intercalating in erythrocyte membranes, was measured after the addition of increasing concentrations of dendrimers using PerkinElmer LS-50B spectrofluorometer (Perkin-Elmer, Waltham, MA, USA). The excitation wavelengths were 348 nm and 358 nm and the emission wavelengths were 426 nm and 428 for DPH for TMA-DPH, respectively. The slit width of the excitation monochromator was 6 nm and that of the emission monochromator was 8 nm.
The fluorescence anisotropy values were calculated from Jablonski’s equation: r=(IVVGIVH)/(IVV+GIVH), 
where r = fluorescence anisotropy, IVV and IVH = the vertical and horizontal fluorescence intensities, respectively, to the vertical polarization of the excitation light beam used. G = IVH/IVV (grating correction factor) corrects the polarization effects of the monochromator. The measurements were performed with Perkin Elmer software.
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3

Comprehensive Characterization of Organic Compounds

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1H NMR and 13C NMR spectra were recorded with
a Bruker AVANCE NMR spectrometer. Elemental analysis was performed
using a Bio-Rad elemental analysis system. MALDI-TOF mass spectra
were performed on an AXIMA CFR MS apparatus (COMPACT). Thermal gravimetric
analysis (TGA) and differential scanning calorimetry (DSC) were performed
with a PerkinElmer-TGA 7 and PerkinElmer-DSC 7 instrument, respectively,
under a nitrogen atmosphere at a heating rate of 10 °C/min. UV–vis
absorption and PL spectra were recorded on a PerkinElmer LAMBDA 35
UV–vis spectrometer and PerkinElmer LS 50B spectrofluorometer,
respectively. The PLQYs were measured using a quantum yield measurement
system (C10027, Hamamatsu Photonics) excited at 360 nm. The transient
PL spectra were measured by a HORIBA Jobin Yvon Fluorolog-3 spectrofluorometer.
Also, the prompt and delay lifetimes were estimated according to a
monoexponential and tri-exponential fittings, respectively. CV curves
were recorded on an EG&G 283 Princeton Applied Research potentiostat/galvanostat
system. Ferrocene was used as the reference and n-Bu4NClO4 was used as the supporting electrolyte.
The HOMO and LUMO energy levels were calculated according to the equation
HOMO = −e[Eonset,ox + 4.8] V, LUMO = HOMO + Eg, where Eonset,ox was the onset value of the first oxidation
potential, and Eg was the optical band
gap estimated from the absorption onset.
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4

Measuring LPS Aggregate Hydrophobicity

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The hydrophobicity of LPS aggregates was determined by using the pyrene fluorescence peak I to peak III ratio method. Briefly, an apyrogenic phosphate-buffered saline saturated with the pyrene probe (Sigma-Aldrich) was filtered and added to LPS solution in saline (final LPS concentration, 20 μmol/L), and fluorescence was measured at room temperature on an LS50B spectrofluorometer (Perkin Elmer, Waltham, MA, USA). Pyrene emission fluorescence spectra were scanned from 350 to 400 nm with an excitation wavelength of 335 nm. The hydrophobic ratio was calculated by dividing the intensity of the first fluorescence peak (peak I–374 nm) by that of the third peak (peak III–384 nm). Hydrophobicity correlates inversely with the I–III ratio.
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5

Cytosolic calcium imaging in olive pollen

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Cytosolic Ca2+ levels were determined spectrofluorometrically using the probe FURA-2 AM (Del Pino et al., 2019a (link),b (link)). Olive pollen (100 mg) from sub-samples stored in the dark at 5°C was suspended in 10 ml PBS and hydrated for 2 days at 25°C. Hydrated pollens were harvested by centrifugation at 1,000 g × 4 min and then resuspended in 2 ml HBSS buffer (120 mM NaCl, 5.0 mM KCl, 1 mM MgCl2, 2 mM CaCl2, 5 mM glucose, 25 mM Hepes, pH 7.4). Pollen suspensions were incubated in the dark with FURA-2 (2 μl of a 2-mM solution in DMSO) for 120 min, followed by centrifugation at 1,000 g × 4 min. Pollens were then harvested and suspended in ~10 ml of HBSS containing 0.1 mM EGTA, which was included to rule out or, at least, minimize a potential background due to contaminating ions (to obtain a suspension of 1 × 106 of pollen granules hydrated per ml). Fluorescence was measured in a Perkin-Elmer LS 50 B spectrofluorometer (ex. 340 and 380 nm, em. 510 nm), set with a 10-nm and a 7.5-nm slit width in the excitation and emission windows, respectively. Fluorometric readings were taken after 300–350 s. When required, samples of pollen, H2O2 and Meg were added for specific purposes, as described in the Results section. Cytosolic calcium concentrations [(Ca2+)c] were calculated as described in Grynkiewicz et al. (1985) (link).
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6

Intracellular Ca2+ Dynamics Regulated by pCBs

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The effects of the pCBs on intracellular Ca2+ release that was induced by TRPV1 activation was determined using the selective intracellular fluorescent probe Fluo-3 AM (Molecular probes, Eugene, OR, USA). The HaCaT cells (1 × 106 cells) were loaded for 15 min at 25 °C with 4 µM of Fluo-3 AM, which contained 0.02% Pluronic F-127 (Molecular probes) in an OPTIMEM medium, and then they were washed in the Tyrode’s buffer (145 mM of NaCl, 2.5 mM of KCl, 1.5 mM of CaCl2, 1.2 mM of MgCl2, 10 mM of D-glucose and 10 mM of HEPES; pH 7.4), resuspended in 2 mL of the Tyrode’s buffer and transferred into the quartz cuvette of the LS50B spectrofluorometer (Perkin Elmer, Waltham, MA, USA). Fluorescence was measured at 25 °C (excitation at λ = 488 nm; emission at λ = 516 nm) from the HaCaT cells, which had been pre-incubated with each pCB (6.0 µM of CBG, 4.0 of µM CBC, 9.0 µM of THCV and 13.0 µM of CBGA) and then stimulated with the selective TRPV1 agonist capsaicin (1 µM), as reported in [64 (link)]. The TRPV1-mediated intracellular Ca2+ elevation was expressed as fluorescence intensity (arbitrary units, AU) per 106 cells.
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7

Liposome Fluorescence Characterization

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Unilamellar DPPC liposomes were obtained by sonification of 2 mM/L of phospholipid suspension in the same buffer solution as used in DSC experiments (pH 7.4) using a UP 200s sonificator (Dr. Hilscher, GmbH, Berlin, Germany).
Fluorescent dyes: laurdan and prodan stock solutions (1 mM) were prepared in DMSO. The stock solutions of the studied compounds (30 mM) were also prepared in DMSO. The dispersion of DPPC liposomes was incubated with the fluorescent dye in darkness for 30 min at room temperature, then the studied compound was added, and liposomes were incubated for another 20 min (also in darkness at room temperature). In all of the experiments, the final DPPC concentration was 200 μM. The concentration of the fluorescent dye (laurdan or prodan) was 5 μM. The studied compound concentration in the samples was 25–125 μM. The fluorescence experiments were performed with an LS 50B spectrofluorometer (Perkin-Elmer Ltd., Beaconsfield, UK) equipped with a xenon lamp using emission and excitation slits of 5 nm. The excitation wavelength for laurdan was 390 nm and for prodan was 360 nm. The recorded fluorescence spectra were processed with FLDM Perkin-Elmer 2000 software. It was investigated before the measurements that the studied compounds alone did not exhibit fluorescence in the spectral region of interest.
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8

Measuring Intracellular ROS in HMC-1 Cells

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Intracellular ROS accumulation in HMC-1 cells was measured by staining cells with the green fluorescence probe H2DCFDA, which is rapidly oxidized to highly fluorescent DCF in the presence of intracellular H2O2, and analyzed spectrofluorometrically (model Axiovert 200). Briefly, HMC-1 cells (1 × 105 cells/sample) were preloaded with 5 μM H2DCFDA for 30 min and washed twice with culture medium. The washed cells were incubated with or without SPs or PAF for up to 30 min at 37 °C in a CO2 incubator. The production of intracellular ROS was determined on a Perkin Elmer LS50B spectrofluorometer using excitation and emission wavelengths of 485 and 530 nm, respectively. All background fluorescence was subtracted using the appropriate controls.
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9

Caspase-3 Activity Assay in Cell Lysates

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Cells were washed with PBS and then lysed in a buffer containing 50 mM Tris-HCl, pH 7.4, 10 mM EGTA, 1 mM EDTA, 10 mM DTT, 1% (v/v) Triton X-100, for 30 min at 4 °C. After centrifugation at 15,000× g for 15 min at 4 °C, supernatants were collected and used for detection of caspase activity.
Cell lysate (60 µg of proteins) was mixed with 20 μM fluorogenic caspase-3 peptide substrate, Ac-DEVD-AMC, in the reaction buffer (50 mM Tris–HCl, pH 7.4, 10 mM EGTA, 1 mM EDTA, 10 mM DTT). The reaction mixture was incubated for 30 min, at 37 °C.
Fluorescence was measured on a Perkin-Elmer LS-50B spectrofluorometer, with excitation at 380 nm and emission at 460 nm.
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10

Enzymatic Hydrolysis of Dinucleotide Cap Analogs

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Enzymatic hydrolysis of dinucleotide
cap analogs was performed using DcpS at a final concentration of 30
nM (in experiments with m7GpppG) and at a final concentration
of 5 nM (in experiments with m32,2,7GpppG).
The substrate concentration in the reaction mixture was 10 μM.
The reactions were conducted at 20 °C in 50 mM Tris–HCl
buffer containing 150 mM NaCl, pH 7.2. The fluorometric method, where
the increase in fluorescence due to DcpS-mediated cap dinucleotide
hydrolysis is recorded, was used to measure the progress of cap analog
hydrolysis.22 (link) The reactions were monitored
for 30–60 min by recording the time-dependent increase of the
fluorescence intensity, which is caused by removal of intramolecular
stacking as a result of enzymatic cleavage of the dinucleotide cap
analogs. On the basis of fluorometric data, the fraction of the generated
product was plotted against time, and the pseudo-first order enzymatic
decapping rate constants were calculated.40 (link) Fluorescence experiments were performed using a LS-50B spectrofluorometer
(Perkin-Elmer Co., Norwalk, CT, USA).
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