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17 protocols using x71 microscope

1

Immunostaining of Cultured Cells and Brain Tissue

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Cells were plated 2500/cm2 in 12 well plates on coverslips and cultured under standard condition for several days. Cells were than fixed with 4 % PFA and immuno-stained for actin (Thermo scientific, Massachusetts, USA) overnight and DAPI (1:10000) for additional 5 min. Coverslips were mounted on slides with Immu-Mount (Thermo scientific, Massachusetts, USA). Pictures were taken with Olympus X71 microscope with x1000 magnitude. Exposure time was equal in different cell lines. Images were taken with cell- F software (Olympus, Tokyo, Japan). Image quantification was performed with CellProfiler 2.0 Software (Broad Institute). Animals were deeply anesthetized, followed by PBS and PFA (4%) perfusion. The brains were harvested and fixated in PFA o/n and dehydrated by a sucrose gradient (10%, 20% and 30%). After dehydration, the tissue was emerged in Tissue Tek (Sakura, Netherlands) and frozen at −20°C. Cryosections (20 μm) were obtained on coverslips and permeabilized using methanol. Slices were blocked with 1% Casein (Sigma, Germany) for 1 hour.
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2

Cell Invasion Assay with Cisplatin

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To investigate the invasion ability of cells, 1×105 cells were seeded into the upper chamber of a Transwell chamber with a Matrigel-coated membrane (Corning Inc., Corning, NY, USA). Medium without FBS but with cisplatin was added to the upper chamber, while medium supplemented with 2% FBS and cisplatin was applied to the lower chamber. The cells were subsequently incubated at 37°C for 24 h. Cells that did not invade through the pores were removed using a cotton swab. Cells on the lower surface of the membrane were fixed with 4% paraformaldehyde, stained with 0.05% crystal violet for 15 min at room temperature and counted using an Olympus X71 microscope (Olympus).
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3

Transwell Invasion Assay for Cell Migration

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Transwell invasion assay was performed using the 24-well invasion chambers (Corning, BioCoat, U.S.A.) with an 8 µm pore size PET membrane with Matriel Matrx being treated. Cells were trypsinized and resuspended, then inoculated into the upper Matrgel chamber in 500 μl of serum-free DMEM medium at a concentration of 1 × 105 cells/well. DMEM medium containing 30% FBS in the lower chamber served as the chemoattractant. At the end of incubation, the noninvading cells on the upper membrane surface were erased with cotton swabs. The invaded cells on the lower surface of the membrane were fixed and stained with Giemsa for 5 min. Nine visual fields of each chamber were randomly chosen, and observed under a X71 microscope (Olympus, Tokyo, Japan), and the number of invading cells from pictures was counted by cell counter.
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4

Immunoperoxidase Staining Protocol

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For immunoperoxidase staining, after heat antigen retrieval, sections were treated with 3% hydrogen peroxide in water for 20 min, incubated with serum-blocking solution, and incubated overnight at 4°C with primary antibody (see Table S12). Following washing, sections were then sequentially incubated with biotinylated secondary antibody for 2 h at room temperature, avidin-biotin peroxidase (ABC, 1:100 Vector Laboratories) for 1 h at room temperature, and 3,3′-Diaminobenzidine (DAB) substrate solution (Vector Laboratories) for 5 min. Sections were washed, dried, and cover slipped with DPX mounting medium. Bright-field or fluorescence images were taken with an Olympus X71 microscope using appropriate filters.
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5

Immunohistochemical Analysis of HSF1 in HCC

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The 135 pairs of resected HCC and para-cancerous tissues were fixed overnight with 4% paraformaldehyde, embedded in paraffin and cut into 4 mm thick sections. Immunohistochemical staining was performed with an Envision IHC kit (Maxin Biotechnologies Inc., Fuzhou, Fujian, China). Briefly, the tissue sections were dewaxed and hydrated, followed by antigen retrieval with citrate buffer for 15 min at 100 °C in a microwave oven. The sections were incubated with the primary antibody against HSF1 (Santa Cruz Biotechnology, Inc., USA) at room temperature for 1 h at a dilution of 1:200 and were visualized using the UltraVision Quanto Detection System HRP DAB kit (Thermo Scientific) according to the manufacturer’s protocols. The stained sections were counterstained with haematoxylin and then developed according to the manufacturer’s instructions and scored using an Olympus X71 microscope. Based on the staining intensity, samples were divided into the following grades: 0: < 10% positive staining HCC cells; 1+: 11–25% positive staining HCC cells; 2+: 26–50% positive staining HCC cells; 3+: > 50% positive staining HCC cells. IHC and scoring analysis were performed independently by two investigators.
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6

Scratch Wound Assay for Cell Proliferation

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A total of 1×105 cells were seeded in a 24-well plate and allowed to adhere overnight at 37°C. On the second day, a scratch was made on a 100%-confluent monolayer of cells using a sterile 200 µl disposable pipette tip, and cells were washed with 3 ml PBS to remove debris. Images to evaluate cell proliferation were captured using the Olympus X71 microscope (Olympus) at 0 and 24 h following the scratch.
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7

Peptide Treatment and Cell Morphology

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Cells were seeded at a density of 2500/cm2 in 12 well-plates on coverslips and cultured under standard conditions. After two days, cells were treated with peptides for another 24 h. Cells were than fixed with 4% PFA and stained with phalloidin (1:200, Molecular Probes, Life Technologies) overnight and Hoechst (1:10000) for additional 5 min. Coverslips were mounted on slides with Immu-Mount (Thermo scientific, Massachusetts, USA). Pictures were taken with Olympus X71 microscope with x1000 magnitude. Exposure time was equal in different cell lines. Images were taken with cell- F software (Olympus, Tokyo, Japan). Cell length and nuclear morphology was measured by image J software (NIH, USA).
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8

Immunocytochemistry Protocol for Cell Lines

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Following tryspinization for 5 minutes, cell lines were suspended in PBS and spun down on a microscope slide (10,000/spot), then the fixed with 2% formaldehyde in PBS. The staining procedure was performed at room temperature using the same protocol for tissues and cell lines, as follows. Endogenous peroxidase blockade was performed in 0.3% V/V H2O2 for 5 minutes. Following permeabilization with 0.15% V/V Triton-X100 in PBS, samples were rinsed in PBS and blocked with blocking buffer (5% FBS + 0.05% Tween-20 in PBS) for 1 hour, then incubated with the primary antibody (10 μg/mL in blocking buffer) for 1 hour. After 3 washing steps in blocking buffer (5 minutes each), samples were incubated with the corresponding secondary antibody (2 μg/mL in blocking buffer) for 1 hour. HRP-DAB reaction was carried out for 5 minutes after 3 additional washes, and stopped in water. Slides were mounted with a glycerol-based medium before taking pictures with an inverted Olympus X71 microscope. Antibodies were as follows: rabbit anti-SP17 and mouse anti-PTTG1 (Abcam), goat anti-AKAP4 (Santa Cruz). All secondary antibodies (HRP-linked) were from Abcam.
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9

Cell Migration Assay Protocol

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Cells migration was determined by wound-healing assay. Cells were seeded in 96-well plates at a concentration of 3×104 cells/well and incubated overnight. The center of cell monolayers was scraped with scratch instruments to create a scratch of constant width when the cultured cells reached a density of >90%. Then cellular debris was washed twice with serum-free DMEM medium, and DMEM medium with 0.5%FBS was added. Cells were cultured at 37℃ in a humidified atmosphere of 5% CO2. Wound area was observed and photographed at 0h, 8h and 24h with X71 microscope (Olympus, Tokyo, Japan). Quantitative analysis of cell migration was performed by using an average gap length from five random fields of vision and the percentage of change in the wound area was calculated using the following formula: % change = (average gap length at time 0h) - (average gap length at time 8h/24h) / average gap length at time 0h ×100%.
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10

Quantifying Cell Proliferation and Death

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Cell proliferation was measured using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium-bromide (MTT) assay as describe before20 (link). Cell death was monitored by propidium iodide (PI) staining. Briefly, cells were seeded at 3000 cells/cm2 in 96-well plate and incubated at standard conditions. After 12 h, the cells were treated with scorpion peptides. Forty-eight hours after treatment, cells were incubated with MTT solution (Roth, Karlsruhe, Germany) (5 mg/ml) or PI (Sigma, Germany) (3 μg/ml), at 37 °C, 5% CO2. After 4 h MTT incubation or 10 min of PI incubation, images were obtained using with Olympus X71 microscope (Olympus, Hamburg, Germany) with a long-distance 10 × objective. Exposure time was equal in different groups. Images were taken with cell- F software (Olympus). Cells with 4 h MTT incubation were then lysed with 100 μl acidic isopropanol. OD values were determined with a SLT spectra devise (Crailsheim, Germany) using Tecan × Fluor4 software for quantification.
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