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31 protocols using firefly luciferase

1

Regulation of Beclin-1 by miR-30a

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The wild type (WT) 3′-UTR of human Beclin-1 (5′-GCA AGC CAG ACA GGA AAA AG-3′) and the 3′-UTR sequences carrying mutations (5′-CCT TAA CGA AAA TTT CCT ATG TCT GTC TAT TGG TAT GC-3′) were amplified and subcloned into the pGL3 expression vector downstream of the promoter and coding region of firefly luciferase (Promega, United States). The sequence for miR-30a was obtained from bioinformatics web sites, miTarget, and the matched sites are shown below. VECs (1 × 105 cells/mL) were seeded in 24-well-plates, and each transfected with 100 ng of pGL3-Beclin-1-3′-UTR and pGL3-Beclin-1-3′-URT-mut and miR-30a mimics or inhibitor using HiPerFect transfection reagent. After 36 h, luciferase activity was measured by using the dual-luciferase assay system.
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2

HuNoV Regulation of AQP and Innate Immunity

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Caco2 cells were seeded in 24-well plates overnight and co-transfected with empty vector or plasmid encoding full-length HuNoV cDNA or VP1 and reporter plasmid AQP1-Luc or AQP4-Luc. In some cases, Caco2 cells were co-transfected with empty vector or plasmid encoding full-length HuNoV cDNA or VP1 and IRF-3-responsive reporter plasmid PRD(III-I)4-Luc or NF-κB-responsive reporter plasmid NF-κB-Luc, or co-transfected with empty vector and PRD(III-I)4-Luc or NF-κB-Luc followed by stimulation with SeV (Sendai virus) at 4 h post-transfection. Transfections were carried out using X-tremeGENE™ HP DNA Transfection Reagent (Roche, 6366236001, Penzberg, Germany) according to the manufacturer’s instructions. At 24 h post-transfection, cells were lysed to measure the activity of Firefly luciferase (Promega, E1501, Madison, WI, USA) according to the manufacturer’s instructions. Values for the samples were expressed as fold increase in the value in cells transfected with empty vector.
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3

Dual Luciferase Assay for circRNA-miRNA-mRNA Interactions

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HLE-B3 cells were seeded into 96-well plates and co-transfected with has-miR-6749-3p mimic/NC and psiCHECK™-2 vectors containing has_circ_0007905 wild type (WT) or mutant (Mut) 3′ UTR sequence, and psiCHECK™-2 vectors containing EIF4EBP1 WT or Mut 3′ UTR sequence. At 48 h after transfection, the cells were lysed and incubated with firefly luciferase buffer to detect firefly luciferase activity, followed by incubation with Renilla luciferase to detect firefly luciferase activity (Promega, Madison, WI, USA).
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4

Cytokine Receptor Activation Assay with HEK293T Cells

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A total of 20,000 HEK293T cells were plated into each well of a poly-l-lysine–coated 96-well flat-bottom plate and allowed to adhere overnight. A constitutive cytokine receptor vector (2.5 ng), a STAT response element vector that drives Firefly luciferase (100 ng; Promega, Madison, WI) and Renilla luciferase control reporter vector (1 ng; Promega, Madison, WI) were mixed in a final volume of 5 μl in Opti-MEM (Gibco, Thermo Fisher Scientific, Waltham, MA) (“DNA mix”). Lipofectamine 2000 (0.3 μl; Invitrogen, Thermo Fisher Scientific, Waltham, MA) in 5 μl of Opti-MEM was incubated at room temperature for 5 min and then added to the DNA mix. The mixture was incubated at room temperature for 20 min, and the total volume of 10 μl was added to each well containing HEK293T cells. Twenty-four hours after transfection, cells were left untreated, treated with AP1903 (1 μg/ml; APExBio, Houston, TX), or with the indicated cytokines diluted in serum-free media. At the indicated time points after treatment, reporter activity was determined using the Dual-Glo Luciferase Assay System (Promega, Madison, WI) as per the manufacturer’s instructions. Firefly luciferase activity was first normalized to Renilla luciferase activity, and then STATresponse element fold induction was calculated by normalizing to untransfected controls.
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5

Luciferase Assay of Sox9 Promoter

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The putative promoter region was amplified (see Table S4 file for details) and cloned into pGL4.20-luc2-MCS2, which expressed Firefly luciferase (Promega). The reporter containing Sox9 promoter was co-expressed together with a reporter expressing Renilla luciferase (internal control) plus an empty vector or a vector expressing cFos in p53_KO BMSCs using Turbo DNAfectin 3000 (EGFIE). Cells were lysed and luciferase activity was measured as previously described (He et al., 2015 (link), Li et al., 2012 (link)).
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6

Dual Luciferase Reporter Assay

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Add 20 μL of cells to the tube, add 100 μL of firefly luciferase (Promega, USA) detection reagent, mix well and use the measured value and record. Then 100 μL of renilla luciferase detection working solution (Promega, USA) was added, and the value was detected and recorded. Relative luciferase activity (Firefly LUC/Renilla LUC) was obtained and the experiment was repeated three times.
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7

ADCC Induction Assay for Antibodies

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The test antibodies were incubated with HSV-infected Vero cells or HEK293T cells stably expressing gB and engineered Jurkat reporter cells stably expressing the FcγRIIIa receptor, V158 (high affinity) variant, and an NFAT response element driving expression of firefly luciferase (Promega). Vero cells were infected with HSV-1F/2G at MOI 1. Twenty hours after infection, cells were harvested and distributed in white flat bottom 96 well plates (1.25 × 104 cells per well) and incubated 6 h together with Jurkat effector cells at an effector:target ratio of 6:1 and serial dilutions of test antibodies. Noninfected Vero cells and Raji cells incubated with Rituximab served as negative and positive controls, respectively. Luciferase substrate was added and after 15 min incubation luminescence intensity was measured using a plate reader. Triplicate reads were performed, and means were calculated. Plate Background from control wells was subtracted. Fold of ADCC induction was calculated.
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8

Kinetic Analysis of Firefly Luciferase Luminescence

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Kinetic data of luminescence production in full length firefly luciferase was obtained under the same conditions as that in FLCA. Briefly, firefly luciferase was purchased from Promega (Wisconsin, USA). Luciferase enzyme (150 nM or 450 nM) was suspended in 100 mM MOPS, 19 mM MgSO4, pH 7.3. One microliter of the enzyme solution and 50 μL of a 2x ATP solution (40 mM ATP in 100 mM MOPS, 10 mM MgSO4, pH 7.3) was dispensed to a well in a white 96-well plate (Corning-Costar, NY, USA). The luminescence was measured immediately after injection of a 2x LH2 solution (150 μM LH2, 100 mM MOPS, 10 mM MgSO4, pH 7.3) with periodical integration for 0.2 s for 120 s using Synergy 2 luminometer (Biotek, Vermont, USA).
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9

Quantifying Protein-Mediated Luciferase Activity

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Luciferase assays were performed as described.9 (link), 19 (link) Briefly, 24 well plates were seeded with 5 × 104 Hela PKRKD cells per well 16 hours prior to the experiment. Cells were transfected with 200 ng of the indicated PKR plasmid, the indicated amount of K3 and E3 orthologs, and 50 ng of firefly luciferase (Promega) using GenJet reagent (Signagen) at a DNA to GenJet ratio of 1:2. Empty pSG5 vector was used to maintain the DNA concentration where appropriate. At 48 hours post-transfection, cells were lysed with mammalian lysis buffer (Goldbio) and luciferin (Promega) was added following the manufacturer’s recommendations. Luciferase activity was measured using a GloMax luminometer (Promega). Experiments were conducted in triplicate for each of three independent experiments.
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10

Cloning c-myc Promoter into pGL3-Basic

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PCR was used to amplify the c-myc core promoter from HeLa genomic DNA using the c-Myc promoter primer as shown in Table 1. PCR conditions are described in Supporting information: S1 Table. The 468 bp PCR product was purified using a HiYield Gel/PCR DNA Fragments Extraction Kit (RBC Bioscience, Taipei, Taiwan) and cloned into pGEM-T vector (Promega, Madison, WI, USA). The constructed plasmid was transformed into Escherichia coli (E. coli) strain DH5α. The product containing c-myc core promoter in pGEM-T vector was subcloned into the pGL3-Basic vector, which lacks eukaryotic promoter sequences and contains the firefly luciferase (Promega) as a reporter. The c-myc core promoter sequence was confirmed by sequencing analysis.
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