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3 protocols using antibodies against cytochrome c

1

Investigating Neuroprotective Mechanisms

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7, 8-dihydroxyflavone (TCI laboratories, Tokyo, Japan) was dissolved in dimethylsulfoxide (DMSO)to 100 mM as a stock solution. ANA-12 (Cat# BTB06525, N2-(2-phenyl)benzo-thiophene-2-carboxamide) was purchased from Maybridge (Fisher Scientific Worldwide, Shanghai, China); H2O2 (hydrogen peroxide)and MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) from Sigma-Aldrich (St. Louis, MO, USA); DAPI from Immunochemistry Technologies (Bloomington, USA); Antibodies against cytochrome C, Akt, phosphorylated Akt, NF-κB and IκB were purchased from Cell Signaling Technology (Danvers, MA, USA); antibody against HO-1 from Abcam (Cambridge, MA, USA); the anti-β-actin antibody was procured from Bioss (Beijing, China); goat anti-rabbit IgG-HRP antibody from Santa Cruz Biotechnology (Paso Robles, CA, USA);Goat anti-rabbit IgG antibody conjugated with FITC from Sigma-Aldrich (St. Louis, MO, USA).
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2

Examining Protein Levels and Cytochrome c Release

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The protein levels in cells were examined using Western blot analysis as described for immunoblotting for LC3. To detect cytochrome c release, the mitochondria-free cytosolic protein fraction was isolated using a mitochondria isolation kit obtained from Thermo Fisher Scientific (Rockford, IL, USA). Antibodies against cytochrome c, mTOR, phospho-mTOR (Ser2481), phospho-mTOR (Ser2448), PARP, Bcl-xL, Bad and Bax were obtained from Cell Signaling Technology (Beverly, MA, USA). Antibodies against Bcl-2 and β-actin were obtained from Sigma. The intensity of the immunoreactive bands was determined using GeneTools software (Syngene, Frederick, MD, USA) after scanning the developed films. The results are expressed as the means ± standard deviation (SD) of three independent experiments.
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3

Protein Expression Analysis in Lung Tissues and PASMCs

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Lung tissues and cultured rat primary PASMCs were lysed in RIPA lysis buffer (Beyotime Inc, Jiangsu, China) containing 0.2 mmol/L phenylmethanesulfonyl fluoride. Lysate solutions were centrifuged at 12 000 rpm (×14000 g) for 20 minutes, and supernatant was collected. The protein concentrations were determined using a BCA protein assay kit (Beyotime Inc, Jiangsu, China). The protein suspensions of different groups, containing equal amounts of proteins (30 μg), were separated by SDS‐PAGE, transferred to polyvinylidene fluoride membrane (Millipore, Billerica, MA) and blocked with 5% milk solution. Membranes were incubated with the solutions of cleaved caspase3/poly‐ADP ribose polymerase (PARP), Bcl‐2, Bax, proliferating cell nuclear antigen, and COX‐IV (1:800, Cell Signaling Technology, Danvers, MA) and β‐actin (1ː2000, ImmunoWay, Plano, TX) at 4°C overnight. To measure the release of cytochrome C, the mitochondrial and cytosol pellets were isolated and immunoblotted by antibodies against cytochrome C (1:800, Cell Signaling Technology, Danvers, MA) with voltage‐deopendent anion channel (1:800; Cell Signaling Technology) and β‐actin serving as controls. Blots were then probed by an enhanced chemiluminescence reagent (Millipore, Billerica, MA) after incubation with the corresponding horseradish‐peroxidase‐conjugated antibody solution.
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