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25 protocols using h9 hesc line

1

Efficient Differentiation of hPSCs into Human Intestinal Organoids

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This study was approved by the Korean Public IRB (IRB number: P01-201409-ES-01-09, P01-201609-31-002). The H9 hESC line (WiCell Research Institute, Madison, WI, USA) and two independently derived hiPSC lines were routinely cultured as described previously.22 (link) The 3D hIOs were differentiated as described previously.22 (link) hPSCs were induced into definitive endodermal cells by treatment with 100 ng/mL Activin A (R&D Systems, Minneapolis, MN, USA) for 3 d in RPMI 1640 (Thermo Fisher Scientific, Waltham, MA, USA) and increasing concentrations of fetal bovine serum (FBS, 0%, 0.2%, 2% Thermo Fisher Scientific). To induce differentiation into hindgut (HG) stage cells, definitive endodermal cells were treated with 500 μg/mL FGF4 (R&D Systems) and 3 μM CHIR 99021 (Tocris Bioscience, Minneapolis, MN, USA) in RPMI 1640 medium containing 2% FBS for 4 d. Following HG induction, 3D HG spheroids spontaneously formed. 3D HG spheroids were placed in Matrigel (BD Biosciences, Franklin Lakes, NJ, USA) and cultured in hIO medium containing 100 µg/mL EGF (R&D Systems), 500 µg/mL R-spondin1 (R&D Systems), 100 µg/mL Noggin (R&D Systems), and 1X B27 supplement in advanced DMEM F12 (Thermo Fisher Scientific).
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2

Directed differentiation of hESCs to retinal lineages

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The H9 hESC line from WiCell Inc. was used in this study. Expansion of hESCs was performed on feeder cells as described previously 16. The differentiation of H9 CRX‐GFP reporter lines towards retinal lineages was performed at least three times under three‐dimensional (3D) culture conditions, using bacteriological Petri dishes (BD Biosciences) and IGF‐1 supplemented media as described in our recent publication 12.
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3

Feeder-free culture of hESCs and hiPSCs

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The H9 hESC line was purchased from WiCell Research Institute (Madison, WI, USA). The generation of hiPSC and culture methods of hESC and hiPSCs have been described in a previous report40 (link). Briefly, hESCs and iPSCs were maintained on Matrigel (BD Biosciences) in mTesR1 medium without feeders, and routinely passaged every week.
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4

Culturing H9 hESCs and mESC R1 Cells

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H9 hESC line (WiCell, Madison, WI, USA) was cultured on irradiated mouse embryonic fibroblast (MEF) feeder cells as described previously [18 (link), 19 (link), 21 (link)]. Briefly, hESCs were maintained in DMEM/F12 medium supplemented with 20% Knockout serum replacement (Invitrogen, Seoul, Korea), 0.1 mM 2-mercaptoethanol, 1% non-essential amino acid, 1 mM glutamine, 100 U/ml penicillin G, 100 μg/ml streptomycin, and 4 ng/ml basic fibroblast growth factor (PeproTech, Rocky Hill, NJ, USA). hESCs were subcultured every 5 days with 1 mg/ml collagenase IV (Invitrogen, Seoul, Korea). Mouse embryonic stem cell (R1) line was cultured and maintained as described previously [19 (link), 21 (link)].
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5

Naive Pluripotent Stem Cell Maintenance

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Experiments were carried out using the following cell lines: H9 hESCs (obtained from WiCell) and ICSIG-1 IPSC0028 hiPSCs (obtained from Sigma-Aldrich). The H9 hESC line chemically reset to the naive state was provided by A. Smith75 (link) (with permission from WiCell) and was used for all experiments in Figs. 1–4,7 and Extended Data Figs. 1–3,4a–j. Other naive hPSC lines (H9 and IPSC0028) were newly reset to the naive state in the Pasque laboratory: chemically reset hiPSCs were used in Figs. 5,6 and Extended Data Figs. 4k, 5a–i,k, 7g, and newly chemically reset H9 hESCs were used in Extended Data Fig. 5j. The resetting protocol used is described below. Primed H9 hESCs were used in all experiments with the exception of Extended Data Fig. 5l, where primed IPSC0028 hiPSCs were used. None of the cell lines are on the Register of Misidentified Cell Lines. All cell lines used in this study were authenticated by RNA and protein expression analysis and were also confirmed to be mycoplasma-negative by PCR test.
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6

Culturing H9 and Clinical hESC Lines

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The H9 hESC line (from WiCell Research Institute) was cultured in a chemically defined mTeSR1TM medium on matrigel‐coated wells as previously described.18 Medium changes were performed daily, and confluent cultures were passaged every 4 ‐ 6 days using ReLeSRTM.
The clinical hESC line (Q‐CTS‐hESC‐2) was prepared as described previously.19 Clinical hESCs were cultured in xeno‐free Essential 8TM (E8) medium on vitronectin (VTN‐N)‐coated plates (1 µg/cm2). Cells were passaged every 4‐6 days using Versene.
All cultures were maintained at 37°C in a 5% CO2 incubator (Thermo Fisher Scientific). Mycoplasma contamination was tested every 2 weeks using the MycoAlertTM Mycoplasma Detection Kit (Lonza).
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7

Forebrain Organoid Production from hESCs

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Days 5–14 follow the exact same steps as described in Qian et al., 2018 (link), but with a different media. The induction media used was mTeSR-E5 with 1 µM CHIR99021 (Stem Cell Technologies) and 1 µM SB-431542 (Stem Cell Technologies).
To ensure batch-to-batch variability was kept to a minimum, we started organoid production with the same number of cells each time and an organoid batch production was only started if the hESC culture looked healthy with very low levels of differentiation. In addition, only the H9 hESC line (purchased from WiCell) was used to remove genetic differences introducing batch effects. Furthermore, organoid batchs that did not show the signs of typical forebrain organoid development were not used for experimentation.
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8

Pluripotent Stem Cell Characterization

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H1 hESC line (WiCell Research Institute, Madison, WI), H9 hESC line (WiCell Research Institute, Madison, WI), BC1 hiPSCs (from Dr. Linzhao Cheng) [28 (link)], and Z-15 hiPSCs (from Dr. Zhijian Xiao) [29 (link)–31 ] were used in this study. BC1 cells were derived from BM CD34+ cells reprogrammed by OCT4, SOX2, KLF4, c-MYC, and LIN28 and characterized with pluripotency markers, karyotyping, in vitro pluripotency assay of embyroid body formation, and in vivo pluripotency assay of teratoma formation [28 (link)]. Z-15 cells were derived from peripheral blood mononuclear cells reprogrammed by OCT4, SOX2, KLF4, c-MYC, and BCL-XL and characterized with pluripotency markers, karyotyping, and in vivo pluripotency assay of teratoma formation [30 (link), 31 ]. hPSCs were cultured on Matrigel-coated plates (Corning) in mTeSR1 (Stem cell Technology) to maintain a pluripotent state. Medium was changed daily, and colonies were passaged every 4 days with 2 U/mL Dispase (Sigma) according to the manufacturer’s instructions.
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9

Maintenance of H9 Human Embryonic Stem Cells

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The H9 hESC line was obtained from WiCell Research Institute. Stem cells were maintained in mTeSR1 medium (STEMCELL Technologies, Vancouver, BC, Canada) on plates coated with Matrigel (BD Biosciences, Franklin Lakes, NJ, USA; cat. no. 354277) with the medium changed daily. Cells were passaged by digestion with TrypLE Express (Gibco, Grand Island, NY, USA) and reseeding at a concentration of 1:10–1:15.
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10

Routine Maintenance of H9 hESC Line

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The H9 hESC line (WA09) was supplied by WiCell Research Institute. H9 cells were routinely maintained in mTeSR1 medium (Stem Cell Technologies, 05850) on growth factor-reduced Matrigel at 9 µg/cm2 and passaged every 4 d using ReLeSR (Stem Cell Technologies, 05872). hESCs were cultured for at least five passages before beginning differentiation. Cells were maintained with 2.5 mL of medium per 9.6 cm2 of surface area or equivalent. All pluripotent cultures were negative for mycoplasma contamination as routinely tested using a MycoAlert kit (Lonza).
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