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16 protocols using penicillin

1

Cell Culture and Transfection Protocols

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HEK293T cells, LNCaP cells, MCF7 cells, and A549 cells were purchased from Korea Cell Line Bank (KCLB, Daejeon, Korea). HEK293T cells were cultured in Dulbecco’s modified Eagle’s Medium (DMEM), and LNCaP cells, MCF7 cells, and A549 cells were cultured in Roswell Park Memorial Institute 1640 (RPMI 1640) containing 10% fetal bovine serum, 100 units/mL penicillin, and 100 μg/mL streptomycin (GenDEPOT, Katy, TX, USA). All the cells were maintained at 37 °C in 5% CO2. For plasmid transfection, 2 M CaCl2 and 2X HBS buffer (50 mM HEPES, 10 mM KCl, 12 mM glucose, 280 mM NaCl, 1.5 mM Na2HPO4, pH 7.05) were used in HEK293T cells, and Effectene (Qiagen, Hilden, Germany) was used in LNCaP cells following the manufacturer’s instructions. For siRNA transfection, LipofectamineTM 3000 (Invitrogen, Waltham, MA, USA) was used following the manufacturer’s instructions.
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2

Epithelial and Fibroblast Cell Culture for EMT/FMT

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A549 (human epithelial cells, ATCC-CCL-185; ATCC, Manassas, VA, USA) and MRC-5 (human fetal lung fibroblast cells; ATCC-CCL-171) were cultured in TCM consisting of RPMI-1640 culture medium (GenDEPOT, Katy, TX, USA) or MEM culture medium with 100 U/mL penicillin (GenDEPOT) and 100 μg/mL streptomycin (Gibco, Carlsbad, CA, USA). The cells were maintained in a humidified incubator with 5% CO2 at 37 °C. The A549 and MRC-5 cells were stimulated in TCM with 0.1% fetal bovine serum (FBS; Thermo Fisher Scientific, Rockford, IL, USA) and 5 ng/mL TGF-β1 (R&D Systems, Minneapolis, MN, USA) to induce EMT and FMT.
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3

Cytotoxicity of EJ-AuNPs on HaCaT Cells

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Human epidermal keratinocytes (HaCaT; CLS GmbH, Eppelheim, Germany) were cultured in Dulbecco’s modified Eagle’s medium (DMEM; GenDEPOT, Katy, TX, United States) containing 10% fetal bovine serum (FBS; GenDEPOT), 100 U penicillin, and 100 μg/ml streptomycin (GenDEPOT). The cells were then incubated in a humidified incubator with 5% carbon dioxide (CO2)/95% air. Cells (1 × 104 cells) were plated in a 96-well plate (SPL Life Sciences, Pocheon, Korea) and stabilized for 24 h. The dried EJ-AuNPs or EJ was diluted with serum-free medium (SFM) at concentrations of 25, 50, and 100 μg/ml. After the cells were washed twice with phosphate-buffered saline (PBS), diluted EJ-AuNPs solution was added to the cells and incubated for a further 24 h. To compare the cytotoxic effect of EJ-AuNPs, only SFM and commercial dexamethasone (20 μg/ml)-containing SFM were added to the cells. The cytotoxic effects of EJ-AuNPs against HaCaT cells were measured using a conventional 3-(4,5-cimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) solution (Sigma-Aldrich, St. Louis, MO, United States) and a live/dead cell staining kit (Thermo Fisher Scientific, Cambridge, MA, United States), according to the manufacturer’s instructions.
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4

Radioligand Binding Assay for β2AR

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All β2AR ligands were purchased from Sigma‐Aldrich. Dulbecco's Modified Eagles Medium (DMEM), Trypsin/EDTA 0.25%, Dulbecco's phosphate buffer saline (DPBS), Penicillin, G‐streptomycin‐amphotericin B, and fetal bovine serum (FBS) were purchased from GenDepot. Dihydroalprenolol hydrochloride, levo‐[ring, propyl‐3H(N)]‐([3H] DHA) and FlashPlate® were purchased from PerkinElmer. 384‐well small volume white plates were purchased from Greiner Bio‐One.
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5

Stable Cell Line Generation for Cancer Research

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The parental ID8 cell line was obtained from Katherine Roby (University of Kansas Medical Center, Kansas City, Kansas, USA). ID8 cells that stably express RFP or turboGFP (tGFP) have been previously described (7 (link)). The parental MC-38 cell line was obtained from Ronald DePinho (University of Texas MD Anderson Cancer Center) with permission from Jeffrey Schlom (National Cancer Institute). ID8 and MC-38 cells were cultured in DMEM supplemented with 10% FBS, 100 units/mL penicillin, and 100 μg/mL streptomycin (GenDEPOT). To generate MC-38 cells that stably express tGFP, MC-38 cells were transfected with pGFP-V-RS vector (Origene) by using Lipofectamine 3000 reagent (Invitrogen), followed by selection with 2 μg/mL puromycin (Sigma-Aldrich).
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6

Culturing HT-29 Colorectal Cancer Cells

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The human colorectal HT-29 cell line (cat. no. 30038) was purchased from the Korean Cell Line Bank, Korean Cell Line Research Foundation. The STR profile of the HT-29 cell line was as follows: D3S1358, 15/17; von Willebrand factor type A, 17/19; fibrinogen α chain, 20/22; amelogenin, X; tyrosine hydroxylase 1, 6/9; thyroid peroxidase, 8/9; CSF1P0, 11/12; D5S818, 11/12; D13S317, 11/12; and D7S820, 10. The cells were cultured at 37°C with 5% CO2 in RPMI-1640 medium (Welgene, Inc.) supplemented with 10% FBS (Welgene, Inc.) containing 100 U/ml penicillin and 100 µg/ml streptomycin (cat no. CA005-10; GenDEPOT, LLC). The culture medium was refreshed every 2 days and the cells were subcultured for use in subsequent experiments.
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7

BJAB Lymphoma Cell Killing Assay

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BJAB lymphoma cells (a generous gift from Genentech, San Francisco, CA, USA) were cultured in phenol red free RPMI medium (Welgene, Daegu, S. Korea) containing 10% fetal bovine serum, 10 units/ml penicillin, and 1 mg/ml streptomycin (all purchased from Gendepot, Barker, TX, USA). For the cell killing activity assay, BJAB cells (1.5 × 104 cells/ml) were plated and treated with recombinant TRAIL or ILz(6):TRAIL. XTT solution (Promega, Madison, WI, USA) was then added and absorbances were monitored at 493 nm using a TECAN Infinite M200 monochromator (Tecan, Mannedorf, Switzerland).
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8

Isolation and Culture of Human PDLFs

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Primary human PDLFs were prepared as described by Somerman et al. [77 (link)]. Collection of human PDL from the premolar and third molar was approved by the Institutional Review Board of Chonnam National University Dental Hospital (Approval No., CNUDH-2016-013; 20 October 2016). All participants were adults without periodontal disease. The PDLFs were grown in Dulbecco’s modified Eagle’s medium (Gibco BRL, Waltham, MA, USA) supplemented with 10% heat-inactivated fetal bovine serum (GenDepot, Katy, TX, USA), 100 U/mL penicillin, and 100 μg/mL streptomycin (GenDepot, USA) at 37 °C in a humidified atmosphere containing 5% CO2. When they achieved confluence, the cells were trypsinized using 0.25% trypsin/0.02% ethylenediaminetetraacetic acid solution (Sigma-Aldrich, St. Louis, MO, USA). Cells in which PDLFs proliferated sufficiently were sub-cultured five to six times at a ratio of 1:2 to 1:3 in a 100 mm culture dish and were used in this experiment.
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9

Generation of AZA-resistant leukemia cell line

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The F-36P human leukemia (MDS) cell line [46 (link)] was obtained from European Collection of Authenticated Cell Cultures (ECACC, Salisbury, UK). The AZA-resistant F-36P cell line, F-36P/AZA, was generated by treating the parental F-36P cells with incrementally increasing concentrations of AZA (Sigma-Aldrich, St. Louis, MO, USA) ranging from 1 μM to 125 μM. Selected cells were cultured in AZA-free medium for at least 2 weeks before being used in experiments. F-36P and F-36P/AZA cells were cultured in RPMI-1640 medium (GenDEPOT, Katy, TX, USA) containing 5% fetal bovine serum (GenDEPOT), 1% penicillin (GenDEPOT), 5 ng/mL of interleukin (IL)-3 (Sigma-Aldrich), and 2 mM of glutamine (Sigma-Aldrich). Cells were maintained at 37 °C in an atmosphere containing 5% CO2.
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10

Cell Culture Conditions for Lenti-X 293T and MCF-7

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Lenti-X 293T (Clontech, 632180) and MCF-7 (Korea Cell Line Bank, 30022) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; GenDepot, CM-002) supplemented with 10% fetal bovine serum (FBS; Gibco, 16000-044) and 100 U/ml penicillin + 100 μg/ml streptomycin (GenDepot, CA005). The cells were grown in a humidified incubator containing 5% CO2 at 37 °C.
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