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7 protocols using streptomycin

1

Culture of B-cell lines in RPMI 1640

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BC3, BCBL1 (human B-cell lines derived from PEL carrying latent KSHV), Raji (human B cell line derived from BL carrying latent EBV) and B95-8 (marmoset B-cell line EBV-infected)31 (link) were cultured in RPMI 1640 (Sigma Aldrich), 10% Fetal Bovine Serum (FBS) (Sigma Aldrich), L-glutamine (Aurogene) and streptomycin (100 μg/ml) and penicillin (100 U/ml) (Aurogene) in 5% CO2 at 37 °C.
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2

Culturing and Treating Human Colon Carcinoma Caco2 Cells

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Human colon carcinoma Caco2 cells (ICLC HTL97023) provided from the National Institute for Cancer Research of Genoa (Italy), were routinely cultured in Dulbecco’s modified Eagle’s medium (DMEM) GLUTAMAX medium supplemented with 10% (v/v) heat-inactivated fetal bovine serum (FBS), 1% (v/v) HEPES 1M, 1% (v/v) non-essential amino acids (Gibco), 1% L-glutamine 200 mM, penicillin (100 U/mL), and streptomycin (100 mg/mL) (Aurogene, Italy) and maintained in 25 cm2 culture flasks (BD Biosciences, Franklin Lakes, NJ, USA) at 37 °C in a 5% CO2 and 95% air-humidified atmosphere. Confluent cultures were split 1:3–1:6 every two days, after washing with PBS 1X (without Ca2+ and Mg2+), using Trypsin/EDTA and seed at 2–5 × 104 cell/cm2, 37 °C, 5% CO2. Cell quantification was made through trypan blue assay.
Cell treatments were carried out by using freeze-dried methanolic extracts from SD5 (before and after 24 h of fermentation), resuspended in DMEM (10 mg/mL, stock solution), and sterilized through a 0.22 mm filter membrane (Millipore Corporation, Bedford, MA, USA).
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Culturing Human Colon Cancer Caco-2 Cells

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Human colon carcinoma Caco-2 cells (ATCC, HTB-37 clone) were routinely cultured in 25 cm2 culture flasks (BD Biosciences, New Jersey, USA) in Dulbecco’s modified Eagle’s medium (DMEM) at pH 7.4. Supplementation was with 10% (v/v) heat-inactivated fetal bovine serum (FBS), 1% (v/v) HEPES 1M, 1% (v/v) non-essential amino acids (Gibco), 1% L-glutamine 200 mM, penicillin (100 U/mL), and streptomycin (100 mg/mL) (Aurogene, Italy). Cells stayed in an incubator at 37 °C in a 5% CO2 and 95% air-humidified atmosphere. Refreshing of the medium was every 2–3 days and cells were split once a week. Cells were observed periodically for changes in growth by using an inverted-phase contrast microscope (Olympus, CK2 model). For cell treatments, freeze-dried digested pasta samples were resuspended in DMEM (10 mg/mL, stock solution) and sterilized through 0.22 mm filter membrane (Millipore Corporation, Bedford, MA, USA).
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4

THP-1 Cell Differentiation and Inflammasome Activation

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Human myelomonocytic THP-1 cells were cultured in RPMI 1640 medium (Aurogene, Rome, Italy) supplemented with fetal bovine serum (10%; Aurogene), L-glutamine (2 mM; Aurogene), penicillin (100 IU/mL; Aurogene) and streptomycin (100 mg/mL; Aurogene). Cell culture medium was replaced every 2−3 days, and the cultures were maintained at 37 °C and 5% CO2 in a fully humidified incubator. The day before each experiment, cells were plated in 48-well culture plates (90.000 cells/well) and were differentiated by treatment with PMA (50 nM, 24 h; Sigma-Aldrich). PMA-differentiated THP-1 cells were washed twice with phosphate-buffered saline (PBS) and primed with LPS (10 μg/mL, 4 h; Sigma-Aldrich) in serum-free medium. Cells were then incubated with compounds dissolved in medium containing 0.1% DMSO for 1 h and cell death was triggered with ATP (5 mM, 90 min; Sigma-Aldrich). MCC950 (Sigma-Aldrich batch #45216 and batch #85021 and from Crysdot (product n. CD31002496; OS05876-18070932) was used in the experiments.
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5

Murine Macrophage Cell Line Cultivation

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A murine monocyte/macrophage J774 cell
line was obtained from the American Type Culture Collection (ATTC
TIB 67). The cell line was grown in adhesion in Dulbecco’s
modified Eagle’s medium (DMEM) supplemented with glutamine
(2 mM, Aurogene Rome, Italy), Hepes (25 mM, Aurogene Rome, Italy),
penicillin (100 U/mL, Aurogene Rome, Italy), streptomycin (100 μg/mL,
Aurogene Rome, Italy), fetal bovine serum (FBS, 10%, Aurogene Rome,
Italy), and sodium pyruvate (1.2%, Aurogene Rome, Italy) (DMEM completed).
The cells were plated at a density of 1 × 106 cells
in 75 cm2 culture flasks and maintained at 37 °C under
5% CO2 in a humidified incubator until 90% confluence.
The culture medium was changed every 2 days. Before a confluent monolayer
appeared, the subculturing cell process was carried out.
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6

Murine J774 Macrophage Cell Line Protocol

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Murine monocyte/macrophage
J774 cell line was obtained from the American Type Culture Collection
(ATTC TIB 67). The cell line was grown in adhesion in Dulbecco’s
modified Eagle’s medium (DMEM) supplemented with glutamine
(2 mM, Aurogene Rome, Italy), Hepes (25 mM, Aurogene Rome, Italy),
penicillin (100 U/mL, Aurogene Rome, Italy), streptomycin (100 μg/mL,
Aurogene Rome, Italy), fetal bovine serum (FBS, 10%, Aurogene Rome,
Italy), and sodium pyruvate (1.2%, Aurogene Rome, Italy) (DMEM completed).
The cells were plated at a density of 1 × 106 cells
in 75 cm2 culture flasks and maintained at 37 °C under
5% CO2 in a humidified incubator until 90% confluence.
The culture medium was changed every 2 days. Before a confluent monolayer
appeared, subculturing cell process was carried out. Cells (0.5 ×
106 cells/mL) were pretreated for 2 h in the absence or
presence of 28 (0.1–10 μM) and then stimulated,
for 24 h, with lipopolysaccharide (LPS) from E. coli, Serotype 0111:B4, (10 μg/mL; 100 μL in DMEM completed
with FBS, Sigma-Aldrich, Milan, Italy).42 (link) The supernatants were collected for the measurement of PGE2 levels by ELISA assay (Cayman Chemical, Vinci-Biochem, Vinci, Italy).
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7

Isolation of Muscle Cells from FSHD Patients

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Upon collection, biopsies from four control, four FSHD STIR− and five FSHD STIR+ muscles were mechanically and enzymatically digested to isolate cells. Muscle specimens were washed in phosphate-buffered saline (PBS, Aurogene, Rome, Italy) supplemented with 1% antibiotics (penicillin 100 IU/ml, streptomycin 100 mg/ml, Aurogene), initially processed by manual fragmentation with scissors and subsequently digested with 2 mg of collagenase/dispase (Merck, Darmstadt, Germany) at 37 °C for 30 min. The tissue homogenates were filtered through a 40 µm cell strainer and the cells pelleted after centrifugation were resuspended in CYTO-GROW medium (Resnova, Rome, Italy). Cells were plated in a 25 cm2 flask coated with 0.1% Gelatin (Stem cell Technologies, Vancouver, Canada) and incubated in a humidified atmosphere at 37 °C and 5% CO2.
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