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21 protocols using sc 1506

1

Histological and Immunohistochemical Analysis of Rat Brains

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The brains of E20 (for CD31, MMP2 and MMP9), P0 (for hematoxylin and eosin and collagen IV), or P52 (for Luxol Fast Blue, myelin basic protein and SMI-312) rats that had been perfused with 10% neutral buffered formalin were post-fixed 2–3 days in paraformaldehyde. Brains were transferred to 30% sucrose for cryopreservation then frozen in OCT. Cryosections (10 μm) were stained with hematoxylin and eosin (H&E) or Luxol fast blue (LFB) following standard protocols [28 (link)].
Immunohistochemistry was performed as described [20 (link),28 (link)]. Sections were incubated overnight with primary antibodies, including: goat anti-CD31 (PECAM-1) (1:200, sc-1506; Santa Cruz Biotechnology, Santa Cruz, CA); rabbit anti-MMP2 (1:100; sc-10736; Santa Cruz); rabbit anti-MMP9 (1:200; #ab38898; Abcam, Cambridge, MA); rabbit anti-collagen IV (1:400; #ab6586; Abcam); rat anti-myelin basic protein (MBP) (1:200; #ab7349; Abcam); mouse anti-SMI-312 (1:200; #837901; BioLegend, San Diego, CA) at 4°C. After several rinses in PBS, sections were incubated with species-appropriate fluorescent secondary antibodies (Alexa Fluor 488 and 555, Molecular Probes, Invitrogen, Carlsbad, CA) for 1 hour at room temperature. Controls included the omission of primary antibodies.
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2

Protein Expression Analysis via Western Blot

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Western blot analysis was performed as previously described (22 (link)). The blots were incubated overnight with the primary antibodies against ETS-1 (SC-350; Santa Cruz Biotechnology), CD31 (SC-1506, Santa Cruz Biotechnology), α-SMA (ab5694, Abcam), and FSP-1 (ab27957, Abcam) at 4°C overnight. Then, blots were washed and incubated with secondary antibodies.
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3

Protein Expression Profiling in Cells

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Total cellular protein was extracted to evaluate the levels of CD31, FSP1, α-SMA, IL-1β and PKCβ. Equal amounts of protein obtained from each lysate were electrophoresed in a 4–20 % SDS–polyacrylamide gel and transferred onto nitrocellulose membranes (Pall, USA) by electroblotting. The blots were incubated overnight with primary antibodies against CD31 (sc-1506, Santa Cruz, CA), FSP1 (ab-27957, Abcam), a-SMA (ab-5694, Abcam), IL-1β (MAB601, R&D System) and PKCβ (GTX113252, GeneTex) followed by horseradish peroxidase-labelled secondary IgG (Santa Cruz). Signals were detected using an advanced ECL system (GE Healthcare, UK). β-actin was used as the internal control.
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4

Quantifying Cardiac Capillary Density

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Paraffin-embedded heart sections (5 μm thick) from 16-week animals were incubated overnight at 4 °C with a CD31 antibody (1:100, sc-1506, Santa Cruz, CA). Secondary antibody, ABC reagents and 3,3′-Diaminobenzidine (DAB) were used to detect CD31 antibody and Hematoxylin (blue) was used to counterstain. Images were taken at 40× magnification and capillaries <15 μm, labeled in brown, were counted and normalized to area by two blinded individuals.
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5

Histological Analysis of Organ Samples

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To prepare samples for histological analysis, the harvested organs were fixed in 10% formaldehyde in PBS (Rapid Fixative, Kojima Chemical Industry, Saitama, Japan) for 4 days at 4 °C, followed by dehydration, and, lastly, they were embedded in paraffin. The paraffin-embedded organs were sliced into 2–4 µm sections. Immunohistochemistry (IHC) staining for anti-CD 31 was carried out using an automated staining processor (Discovery XT, Ventana Medical Systems, Inc., Oro Valley, AZ, USA). The vascular endothelial cells’ IHC staining was carried out in pre-diluted polyclonal goat anti-CD31 antibody (1/100 dilution; sc-1506, Santa Cruz Biotechnology, Inc., Dallas, TX, USA; 2 h at room temperature) combined with a biotinylated anti-goat IgG (H + L) (BA5000, Vector Laboratories, Burlingame, CA, USA; 20 min at room temperature). Polyclonal rabbit anti-LYVE-1 antibody diluted in 1:250 (103-PA50AG, ReliaTech GmbH, Wolfenbüttel, Germany; 2 h at room temperature) combined with a biotinylated anti-rabbit IgG (H + L) (BA1000, Vector Laboratories, Burlingame, CA, USA; 20 min at room temperature) was used to carry out the IHC staining of vascular endothelial cells. A BX-51 Olympus microscope connected to a digital camera (DP72; Olympus corporation, Tokyo, Japan) was used to determine the specimen boundary at low magnification.
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6

Immunofluorescence Staining of Cardiac Cryosections

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Immunofluorescence staining was performed on the cryosections as described previously (10 (link)). Briefly, tissues were fixed in 4% paraformaldehyde overnight at 4°C and then cryo-embedded in optimum cutting temperature compound (OCT) (Tissue Tek, USA). Transverse heart sections were cut at 10 μm thickness, and the cryosections were incubated with primary antibodies overnight at 4°C. After washing with 0.5% TritonX-100 in phosphate buffer saline, sections were incubated with secondary antibodies for 2 hours at room temperature. The following antibodies were used: CD31 (SC-1506, Santa Cruz Biotechnology, USA), α-SMA (ab5694, Abcam, USA), FSP-1 (ab27957, Abcam) and ETS-1 (SC-350; Santa Cruz Biotechnology).
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7

Immunohistochemical Analysis of Cardiac Cells

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Cells were fixed in 4% PFA at room temperature for 30 min and washed with PBS twice. After permeabilizing with 0.3% Triton X-100 for 20 min, the cells was treated with 5% BSA for 1-2 h, then incubated with various primary antibodies at 4 °C overnight. After thorough washing, secondary antibodies conjugated with Alexa Fluor 555 or Alexa Fluor 488 were used. Nuclei were visualized with Hochest 33342 (10 μg/ml). Images were captured with an Olympus IX71 inverted fluorescent microscope. Antibodies used in this study are as following: cTNT (ab10214, Abcam), GATA4 (MABE477, Millipore and SC-25310 Santa Cruz), NKX2.5 (8792, CST & Ab35842, Abcam), cTNI (ab47003, Abcam), α-actinin (A7811, Sigma), Mef2c (5030S, CST), α-MHC (ab15, Abcam), Sca-1 (17-5981-81, eBioscience), α-SMA (A2547, Sigma), PECAM (SC-1506, Santa Cruz), Cnn2 (SC-16607, Santa Cruz), VE-cadherin (SC-9989, Santa Cruz), MLC2v (ab79935, Abcam), MLC2a (311011, Synaptic systems), and HCN4 (Ab69054, Abcam).
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8

Tissue Immunohistochemical Analysis of Tumors

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A standard Haematoxylin and Eosin (H&E) staining was performed to assess the morphology of tumours. Immunohistochemistry was carried out as previously described [27 (link)]. The following primary antibodies were used: mouse anti-MCT1 (1:500, sc-365501, Santa Cruz Biotechnology), rabbit anti-MCT4 (1:500, sc-50329, Santa Cruz Biotechnology), mouse anti-CD147 (1:400, sc-71038, Santa Cruz Biotechnology), as previously described [25 (link)], rabbit anti-CAIX (1:2000, ab15086, Abcam) and mouse anti-Ki67 (1:200, AP10243CM, Gennova), during 2 hours at room temperature, using UltraVision Detection System Anti-polyvalent, HRP (Labvision Corporation). Goat anti-PECAM (CD31, 1:400, sc-1506, Santa Cruz Biotechnology) diluted in PBS, was incubated overnight at room temperature, for further incubation with biotinylated horse anti-goat (1:500, BA-9500, Vector Laboratories) secondary antibody, 1 hour at room temperature. In the remaining steps, the R.T.U. Vectastain Elite ABC Kit (Vector Laboratories) was used. Antigen retrieval to Ki67 and CD31 reactions were performed with citrate buffer, in the microwave for 15 minutes.
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9

Immunohistochemical Analysis of Xenografts

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Xenograft tumor and matrigel plug sections were deparaffinized with xylene and rehydrated with addition of ethanol. Heat-induced antigen retrieval was performed in Tris-EDTA buffer. Tissue sections were subjected to 3% hydrogen peroxide to remove endogenous peroxidase activity and then blocked with blocking buffer (P0102; Beyotime, China). Slides were incubated with primary antibodies against CD31 (sc-1506; Santa Cruz Biotechnology, Dallas, Texas, USA), VWF (sc-14014; Santa Cruz Biotechnology), CD34 (#3569; Cell Signaling Technology, MA, USA), and GFP (ARH2068; Antibody Revolution, San Diego, CA, USA) at 4°C overnight. Sections were washed three times for 5 minutes each time. For immunofluorescence analysis, fluorescein-labeled secondary antibodies (20014; 20106; Biotium, Hayward, CA, USA) were incubated at room temperature for 1 hour. Before immunofluorescence analysis with a confocal microscope, cells were counterstained with DAPI. For immunohistochemistry analysis, Real Envision Detection Kit (GK500710; Gene Tech, Shanghai, China) was used and signals were visualized through the diaminobenzidine reaction.
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10

Cardiac Fibrosis and Capillary Density Quantification

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Transversal sections of 7 µm thick were obtained at cardiac midventricular level and stained using the Sirius Red/Fast Green kit (Chondrex). Fibrosis was assessed in all animals in four randomly chosen fields per section. The area of collagen deposition indicated by red staining was outlined and quantified using an automated image analysis program (Carl Zeiss, AxoVision 4.6, Zaventem, Belgium). Blood vessels were excluded. Total collagen deposition to the global cardiac area was calculated and expressed as percent collagen deposit.
Capillary density was quantified from histological sections by immunohistochemical staining for CD31 (SC-1506, Santa Cruz, 1/100). Capillaries were visualized by 3-3-diaminobezedine (DAB) and counterstained using hematoxylin. The amount of blood vessels were counted in 10 different fields per section and averaged. Data are expressed as amount of capillaries per µm2.
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