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25 protocols using cy3 conjugated secondary antibody

1

Immunofluorescence Staining of Cultured Cells

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The cultured cells were fixed in 4% paraformaldehyde for 20 min at room temperature, subsequently washed with PBS and treated with 0.3% Triton X-100(Sigma) in PBS for 15 min. Then the samples were incubated with PBS containing 2% bovine serum albumin (BSA) at 37°C for 10 min. Incubation with the primary antibodies(mouse anti-c-kit, Santa Cruz, 1:200; Rabbit anti-vimentin, Abcam, 1:100; Rabbit anti-CD34, Bioss, 1:300; Rabbit anti-Nanog, Santa Cruz, 1:100; Rabbit anti-sca-1, Millipore,1:200) was performed at 4°C overnight. The samples were subsequently incubated FITC- or Cy3-conjugated secondary antibodies (Beyotime). The nuclei were counterstained with 1μg /ml DAPI (Roche). Negative controls were obtained by following all the same protocol but the primary antibodies. All experiments were performed in triplicate.
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2

Immunofluorescence Analysis of EMT Markers

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At 48 h after RNA transfection, cells from different groups were seeded onto coverslips in 6-well dishes. After completely adhered to the coverslips, cells were fixed with 4% paraformaldehyde for 30 min, permeabilized with 1% (v/v) Triton X-100 for 10 min at room temperature (RT), and then blocked with 1% goat serum for 1 h at RT. Subsequently, the coverslips were incubated with primary antibodies (anti E-cadherin, Abcam; anti vimentin, Abcam) at 4℃ overnight. Next day, the coverslips were washed three times with PBS and incubated with Cy3- conjugated secondary antibodies (Beyotime) for 1 h at RT, then all the coverslips were counterstained with 4’-6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich). Finally, photomicrographs were captured with a Nikon Total Internal Reflection Fluorescence microscope. The semi-quantitative analysis of immunofluorescence staining was conducted using Image Pro Plus software.
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3

Immunofluorescence Staining of Brain Tissues

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Immunofluorescence staining was performed at 72 h after the operation. Briefly, the mice were anesthetized and perfused with 4% paraformaldehyde. Brain specimens were rapidly collected and postfixed in 4% paraformaldehyde for 1 day and a 30% sucrose solution for the following 3 days. Fifteen μm thick coronal sections were cut and treated with 0.3% Triton for 30 min. The brain sections were subsequently treated with 5% donkey serum for 1 h for antigen block and incubated with the primary antibodies overnight in a 4°C freezer, including anti-zonula occludens-1 (1 : 100, Invitrogen, Grand Island, NY), anti-von Willebrand factor (1 : 100 Abcam), anti-Iba1 (1 : 100, Abcam), and anti-MST1 (1 : 100, Invitrogen, Grand Island, NY), followed by FITC-conjugated secondary antibody (1 : 200, Beyotime Biotechnology, Shanghai, China) and cy3-conjugated secondary antibodies (1 : 200, Beyotime Biotechnology, Shanghai, China) for 1.5 h at room temperature. A confocal laser scanning microscope (Zeiss, Oberkochen, Germany) was used to detect the expression of fluorescent dyes.
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4

Macrophage Identification in Liver Tissue

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Frozen sections of liver tissue were prepared immediately after sampling and then incubated with F4/80 (1:300, CST, USA) antibodies at 4℃ overnight. The sections were incubated with Cy3-conjugated secondary antibodies (1:300, Beyotime) and stained with DAPI (Beyotime). Finally, a ZEISS 780 laser confocal microscope was used to capture fluorescence images and analyze macrophage clearance by immunofluorescence staining.
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5

Nrf2 Immunofluorescence Staining Protocol

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Cells were washed with PBS, fixed with 4 % formaldehyde and blocked with 1 % BSA/PBS for 1 h at room temperature. Then, cells were incubated with a primary antibody against Nrf2 (Abcam; ab62352) overnight at 4 °C and incubated with Cy3-conjugated secondary antibodies (Beyotime, Nantong, China) for 1 h at room temperature. DAPI (Sigma) was used to stain the nuclei and images were captured using an UltraViewVoX confocal microscope (PerkinElmer, Waltham, MA).
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6

Immunohistochemical Analysis of Brain Tissue

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For immunohistochemical staining of brain tissues, frozen brain sections were deparaffinized and subjected to microwave heat-induced epitope retrieval. The sections were blocked with 10% normal goat serum for 30 min and incubated with primary antibodies against NSE (1:100, Abcam) or NF-200(1:100, Abcam) overnight at 4°C. The sections were then incubated with appropriate Cy3-conjugated secondary antibodies (1:200, Beyotime) for 60 min at room temperature. Images were obtained at a magnification of 400× from 5 random microscopic fields using a fluorescence microscope.
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7

Immunofluorescence Analysis of Morphine-Treated Cells

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Cells were seeded into 12‐well plates covered with cell slides made of high‐quality glass (WHB‐12‐CS, WHB scientific, Shanghai, China) at a density of 2 × 104 cells/well and treated with morphine hydrochloride (MH) for 24 h. Next, cell slides were fixed with 4% paraformaldehyde (Servicebio, Wuhan, China) for 20 min and treated with 0.1% Triton X‐100 (P0096, Beyotime) for 10 min. Then, cell slides were blocked with 3% bovine serum albumin (Beyotime) in phosphate buffer (PBS; Corning, New York, USA) for 1 h at room temperature and incubated with primary antibody (MOR, 1:400, Cat# ab134054, Abcam; CK19, 1:400, Cat# ab52625, Abcam; N‐cadherin, 1:400, Cat# 13116, Cell Signaling Technologies; Vimentin, 1:400, Cat# 5741, Cell Signaling Technologies; Slug, 1:400, Cat# 9585, Cell Signaling Technologies) overnight at 4°C. Finally, slides were incubated for 1 h with Cy3‐conjugated secondary antibody (Beyotime), and then with DAPI (Vector, Newark, USA) for 10 min at room temperature. Representative fields were imaged with a laser confocal microscope (Model IX83, Olympus, Tokyo, Japan).
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8

Immunofluorescence Analysis of B7-H3 Expression

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Cells were incubated in 24-well plates under standard cell culture conditions (5 × 103 cells per well). After 12 h, cells were blocked with 5% BSA for 15 min, stained with B7-H3 antibody (Abcam, ab227679) for 1 h, Cy3-conjugated secondary antibody (Beyotime, A0516) for 40 min and DAPI (Beyotime) in the dark. Images were captured on a fluorescence microscopy.
Tumor tissues from the T cell group mice were collected and immediately froze at −80°C. Sections were fixed in pre-chilled acetone-methanol (1:1) for 20 min at −20°C and then allowed to air-dry for 10 min before being blocked with 5% BSA for 30 min. Subsequently, sections were stained with B7-H3 antibody (Abcam, ab227679) for 1 h, FITC-conjugated secondary antibody (Beyotime, A0562) for 40 min and DAPI (Beyotime) in the dark. Images were captured on a fluorescence microscopy.
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9

Immunofluorescence Staining of MRC-5 Cells

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Fixed MRC-5 cells were blocked with 10% goat serum (Beyotime, China) for 1 h at room temperature, incubated with primary antibody at 4 °C overnight, reacted with Cy3-conjugated secondary antibody (Beyotime, China) for 1 h at room temperature, dyed the nuclei with DAPI (Beyotime, China). Wash with PBST three times for 5 min between each step. The images were acquired by Fluoview 300 confocal laser scanning microscopy (Olympus, Tokyo, Japan).
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10

Immunofluorescence Staining of Bovine Myoblasts

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Bovine myoblasts in 12-well plates were washed three times with PBS, fixed with 4% formaldehyde solution for 20 min, and permeabilised with 0.5% Triton X-100 in sterile water for 10 min. The cells were blocked with 5% BSA in PBS for 30 min and then incubated at 4°C with myosin antibody (Abcam, USA) overnight. After washing cells with PBS, the cells were incubated with Cy3-conjugated secondary antibody (Beyotime) diluted 1:200 in 1% BSA in the dark at room temperature for 2 h. DAPI staining was done simultaneously to show the position of the nuclei. All images were taken on an inverted fluorescence microscope (AMG EVOS).
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