The largest database of trusted experimental protocols

7 protocols using anti mouse alexa647

1

Whole-mount Immunostaining of Embryos

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount immunostainings were performed as described (Mateus et al., 2012 (link)). Embryos were mounted in 80% Glycerol, 2% DABCO (Sigma) diluted in PBS and then imaged using a Zeiss LSM780 confocal microscope with a C-Apochromat 40 × water objective or a C-Apochromat 20 × dry objective. The primary antibodies used were: rabbit anti-BmpR1b (BmpR1ba+b 1:200, Genetex); rat anti-PH3 (1:300, Sigma), mouse anti-Smoc1 (1:200, Abnova), rabbit anti-PSmad1/5/9 (1:100, Cell Signaling), rabbit anti-GFP (1:200, Abcam), rat anti-GFP (1:200, Sta Cruz Biotechnology) and rabbit anti-mCherry (1:200, Living Colors #632496). The secondary antibodies used were: anti-mouse Alexa488, anti-mouse Alexa594, anti-mouse Alexa647, anti-rat Alexa488, anti-rat Alexa594, anti-rabbit Alexa488, anti-rabbit Alexa594 (all 1:500, Molecular probes). Immunostainings were repeated at least 3 times with different biological replicates, per marker and condition.
+ Open protocol
+ Expand
2

Cerebellar Slice Immunohistochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
At 5 weeks posttransplantation, cerebellar slices were rinsed and fixed in 4% paraformaldehyde (PFA) for 1 h at room temperature. Individual slices were cut out from culture inserts and blocked for 3 h at room temperature in Hank's Balanced Salt Solution (HBSS) containing 1 mmol/L 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), 2% HI horse serum, 10% HI goat serum, and 0.25% Triton x-100. Slices were incubated with the following antibodies: mouse anti-MBP (Sternberger Monoclonals Inc, Lutherville, MD), chicken antineurofilament medium chain (NFM) (EnCor Biotech, Alachua, FL) and mouse anti-human nuclei (Millipore) diluted in blocking solution for 48 h at 4°C. Slices were washed 3 × 1 h in PBS and then incubated with anti-mouse IgG2b Texas Red (AbD serotec, Raleigh, NC), anti-chicken Alexa488 (Molecular Probes, Eugene, OR) and anti-mouse Alexa647 (Molecular Probes) secondary antibodies also diluted in blocking solution for 24 h at 4°C. Slices were washed then mounted in Fluoromount G (Southern Biotech, Birmingham, AL).
+ Open protocol
+ Expand
3

Immunostaining of Neurons for Gas7 and Myc

Check if the same lab product or an alternative is used in the 5 most similar protocols
The neurons were fixed using 37°C 4% paraformaldehyde (PFA) for 20 min at room temperature and then washed three times with PBS. The neurons were then permeabilized using 0.2% Triton X-100 in PBS. Blocking was done for 30 min using 3% normal donkey serum and 0.5% bovine serum albumin (BSA) in PBS. Antibodies were diluted in blocking solution and coverslips were stained setting them upside down over a drop of antibody solution. The neurons were incubated in primary antibody for 1 h at room temperature and washed three times for 10 min with 0.2% BSA in PBS. The neurons were then incubated in the secondary antibody for 1 h and then washed three times for 10 min in a similar way. Subsequently, the coverslips with neurons were mounted on glass slides by using Shandon Immu-Mount (Thermo Fisher Scientific).
The mouse monoclonal anti-Gas7 antibody (sc-365385) was purchased from Santa Cruz Biotechnology and the mouse anti-myc (9E10) antibody was purchased from Thermo Fisher Scientific. The dilution of 1:200 was used for both primary antibodies. The anti-mouse Alexa-647 was purchased from Thermo Fisher Scientific and the dilution of 1:400 was used.
+ Open protocol
+ Expand
4

EV Immunophenotyping by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
107 EVs derived from each cell line were diluted in PBS in a final volume of 50 µL. Anti-human CD9 (1:100; Cymbus Biotechnology, London, UK) and anti-human CD63 (1:100; clone H5C6, BD Pharmingen, California, USA) were added and samples were incubated for 1 h at RT and, after that, anti-mouse IgG FITC or anti-mouse Alexa 647 (1:200; ThermoFisher Scientific, Waltham, MA) were added and incubation proceeded for 1 h at RT. For staining control, EVs were incubated only with secondary antibody. 1 mL of filtered PBS was added to each sample and the fluorescent intensity were determined using CytoFLEX flow cytometry (Beckman Coulter, CA, USA). The equipment was calibrated using a mixture of fluorescent beads with size ranging from 100 nm to 1 µm for vesicles detection. Data analysis was performed with CytExpert 2.0 Software.
+ Open protocol
+ Expand
5

Immunostaining of Neuron Subtypes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neurons expressing A-Ch or SA-Ch were fixed in 2% formaldehyde 5% sucrose phosphate-buffered saline (PBS) and permeabilized in 0.1% Triton X-100. After PBS washing, samples were blocked in 1% bovine serum albumin (BSA) PBS, and primary antibodies anti-Cherry (GeneTex GTX59788, 1:500) and anti-PSD95 (Abcam ab9909, 1:600) were used in 0.5% BSA PBS. After washing, primary antibodies were detected with anti-rabbit-TRITC (Sigma-Aldrich T6778, 1:200) and anti-mouse-Alexa647 (Thermo Fisher A32728, 1:200) in 0.5% BSA PBS. Coverslips were mounted in Fluoroshield (Sigma-Aldrich) mounting medium. Hippocampal neurons expressing EGFP, ChETA/EGFP, S-Ch/EGFP, or SA-Ch/EGFP for 24 h were processed as above. Primary antibody was 1:2,500 anti-MAP2 (Abcam ab5392) and it was detected with anti-chicken-Alexa647 (Abcam ab150171, 1:250). For surface NMDAR/AMPAR immunostaining, div 9 neurons were transfected with SA-Ch and palmitoyl-Turquoise2, or palmitoyl-Turquoise2 alone; on the third day from transfection, neurons were fixed in 4% formaldehyde, 5% sucrose PBS and washed, blocked in 5% BSA PBS, and stained with 1:500 anti-GluR1-NT (Millipore MAB2263) and 1:500 anti-GluN1 (Alomone AGC-001), and followed by 1:200 anti-mouse-Alexa488 (Thermo Fisher A32723)/1:200 anti-rabbit-Alexa647 (Thermo Fisher A32733) and mounting.
+ Open protocol
+ Expand
6

Immunofluorescence Labeling of Cytoskeletal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following PBS washes cells were permeabilised with 0.1% (v/v) Triton X-100 for 5 min and then washed in PBS and blocked for 30 min in block buffer (1% BSA, 2% goat serum in PBS). Tubulin was immunolabelled with 2 µg ml−1 anti-α-tubulin (Clone DM1A, Sigma-Aldrich) diluted in block buffer for 1 h at room temperature. Tubulin was secondary labeled with 4 µg ml−1 anti-mouse-Alexa647 and F-actin was labeled with 13 nM phalloidin-Alexa488 (Thermo-Fisher). Cells were washed in PBS and mounted in Hydromount (National Diagnostics) prior to imaging.
+ Open protocol
+ Expand
7

Multiparametric Flow Cytometry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used to detect the following mouse proteins were: CD4-PerCP, -647, -FITC (RM4-5), CD8-biotin, -PerCP, -647 (53-6.7), CD11b-biotin (M1/70), CD16/32 purified (2.4G2), CD19-biotin (1D3), CD25-PerCP, -APC, -PE (3C7), Gr1-biotin (RB6-8C5), CD44-BV421, -PE and -APC (IM7); TCRβ-APC, -PE, and -BV421 (H57-597); CD3e-PerCP, -APC and -PE -biotin (2C11), NK1.1-biotin (PK136), pTα purified (2F5), CD3γε-APC (17A2), anti-mouse pZAP70 -647 (Y319), obtained from BD Pharmingen; F4/80biotin (BM8), CD98-PE (RL388), CD8-BV421 (53-6.7), CD71-PE (R71217), all from eBioscience. Annexin V-PE, 7AAD and the APC-labeled anti-BrdU mAb (3D4) were purchased from BD Pharmingen. The APA1/1 monoclonal antibody, which recognizes a conformational epitope of CD3e, and its use as a probe for the conformational change of the TCR have been described previously (Risueno et al., 2005) (Risueno et al., 2005) .
Where necessary, secondary antibodies (anti-rabbit Alexa647 and anti-mouse Alexa647 from ThermoFisher) or fluorescent probes (Streptavidin-PErcp and -APC from BD Pharmingen, Streptavidin-PE from Invitrogen and Streptavidin -BV421 from Biolegend) were used.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!