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Sc 56053

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Sc-56053 is a laboratory product manufactured by Santa Cruz Biotechnology. It is a specific piece of equipment used in research and scientific applications. The core function of this product is to facilitate various laboratory procedures and analyses, but a detailed description is not available while maintaining an unbiased and factual approach.

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8 protocols using sc 56053

1

Investigating SLPI-mediated Cellular Pathways

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rhSLPI was purchased from Sino Biological, Inc. (Beijing, China). Medium 200 (M-200-500), Low Serum Growth Supplement kit (S003K-LSGS) and trypsin-EDTA were purchased from Thermo Fisher Scientific, Inc. (Gibco; Waltham, MA, USA). The LDH liquid-UV assay kit was obtained from Human (Wiesbaden, Germany), and MTT was purchased from Ameresco, Inc. (Solon, OH, USA). Antibodies against total p38 (sc-728), phosphorylated-p38 (sc-17852-R), total Akt (sc-8312), phosphorylated-Akt (sc-293125), Bax (sc-6236), Bcl-2 (sc-783), and cleaved caspase 3 (sc-56053), β-actin (sc-130301), and the horseradish peroxidase-conjugated secondary antibody (sc-2004) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Other chemicals were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany).
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2

Hippocampus and Intestinal Protein Analysis

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Western blot analysis was performed on the dorsal hippocampus and intestinal tissue samples. Briefly, proteins of the dorsal hippocampus and intestines were isolated, separated by electrophoresis, transferred to a PVDF membrane, and probed with the following primary antibodies: NLRP3 (1:1000, A12694, ABclonal, Woburn, MA, USA), caspase 1 (1:1000, ZRB1233, Sigma-Aldrich, Burlington, MA, USA), caspase 3 (1:1000, sc-56053, Santa Cruz Biotechnology, Dallas, TX, USA), TLR4 (1:1000, SC-293072, Santa Cruz Biotechnology, Dallas, TX, USA), claudin-1 (1:1000, ab15098, Cambridge, MA, USA), occludin (1:1000, SC-8144, Santa Cruz Biotechnology, Dallas, TX, USA), and ZO-1 (1:1000, ab96587, Cambridge, MA, USA). The integrated optical density (IOD) was factored into Ponceau S staining to correct for any variations in total protein loading, as we previously reported [13 (link)]. Bands of interest were visualized using electrochemiluminescence reagents (PerkinElmer, Waltham, MA, USA) and quantified by densitometry (Quantity One Analysis software; Bio-Rad, Hercules, CA, USA) as the IOD after subtraction of the background. The protein abundance was represented as IOD/Ponceau S.
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3

Protodioscin-Induced Apoptosis and Mitophagy

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Protodioscin (PD; CFN99517) with 99% purity was purchased from ChemFaces (Wuhan, Hubei, China). The MTT, DAPI (4′, 6-diamidino-2-phenylindole), and Hoechst 33258 were obtained from Sigma-Aldrich (St. Louis, MO, USA). Primary antibodies against cleaved caspase-9 (9508S) and cleaved PARP (9542S) were purchased from Cell Signaling Technology (Danvers, MA, USA). LC3 antibody (NB100-2220) was purchased from Novus Biologicals (Centennial, CO, USA). Antibodies against cleaved caspase-caspase-3 (SC-56053), PINK1 (SC-518052), Parkin (SC-32282), NIX (SC-166332), BNIP3 (SC-56167), total p38MAPK (SC-7972), phosphoryl p38MAPK (SC-166182), total Akt (SC-56878), phosphoryl Akt (SC-271966), LC3 siRNA (SC-43390), NIX siRNA (SC-37453), and horseradish peroxidase-conjugated secondary antibodies (anti-mouse and anti-rabbit) were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). GAPDH (60004-1-Ig) antibody was purchased from Proteintech Group, Inc. (Rosemont, IL, USA). The p38 siRNA (MAPK14-Homo-760) was purchased from AllBio Company (Taichung, Taiwan).
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4

Comprehensive Western Blot Analysis Protocol

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Western blot analyses were performed as described in a previous study [53 (link)]. The protein concentrations of cell or tissue lysates were measured using the Lowry assay. Depending on the molecular weight of the target protein, 10 μg protein samples were separated using 8% or 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS PAGE) and electroblotted onto a nitrocellulose membrane. The membranes were blocked with 5% non-fat dry milk in Tris buffered saline plus Tween (TBST), immunoblotted with specific primary antibodies against CAV-1 (GTX79350, GeneTex, Irvine, CA, USA), eNOS (A15075, ABclonal, Woburn, MA, USA), BNP (1:500, sc-18813, Santa Cruz Biotechnology, Santa Cruz, CA, USA), cytochrome c (1:1000, sc-13156, Santa Cruz), caspase 3 (1:1000, sc-56053, Santa Cruz), and β-actin (1:1000, T5168, GeneTex), and detected using horseradish peroxidase conjugated secondary antibodies. Fluorography with an enhanced detection kit was used to visualize the signals (ECL, GE Healthcare Life Sciences, Buckinghamshire Amersham Pharmacia International).
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5

Apoptosis Pathway Protein Analysis

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TRAIL/Apo2L (ABIN2973530) was purchased from Atgen. The antibodies for cleaved caspase-3 (sc-56053), caspase-3 (sc-7148), Src homology region 2 domain containing phosphatase-1 (SHP1) (sc-8425), DR4 (sc-8411), BCL2 associated X protein (Bax) (sc-7480) and PARP[poly(ADP-ribose) polymerase] (sc-7150) were purchased from Santa Cruz Biotechnology, while phospho-signal transducer and activator of transcription 3 (STAT3) (#9131), STAT3 (#12640), phospho-Akt(#9271), phosphor-mitogen-activated protein kinase (MAPK) (#9101), phospho-Src (#2105), Bcl-2 (#15071), DR5 (#3696), C/EBP homologous protein (CHOP) (#2895), glucose-regulated protein 78 (GRP78) (#3177) and β-actin (#4967) antibodies were purchased from Cell Signaling Technology. Finally, the antibodies for CNOT2 (ab55679) and cytochrome c (ab13575) were purchased from Abcam.
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6

Protein Analysis in Mouse Tissues

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For protein analysis, protein samples (3 mice/group) were harvested from the three tissue regions collected for protein assay and immunoblotting. Brain tissue samples were homogenized in a radioimmunoprecipitation assay (RIPA) buffer containing protease inhibitors, followed by bicinchoninic acid assay. Equal amounts of proteins extracts were run on 10% SDS-PAGE, followed by immunoblotting analysis. Antibodies for YY1, Cre recombinase, p53, Bax, Bcl-2, caspase-3, CXCL10, TNF-α, and β-actin at 1:1000-1:2000 dilution were used, followed by horseradish peroxidase-conjugated secondary antibody (1:5000 dilution). Antibodies for YY1 (sc-7341), p53 (sc-126), caspase-3 (sc-56053), CXCL10 (sc-374092), TNF-α (sc-52746), Bax (sc-7480), Bcl-2 (sc-7382), and β-actin (sc-47778) were obtained from Santa Cruz Biotechnology and antibody for Cre recombinase (ab216262) were from Abcam. All blots were developed using a West Pico PLUS chemiluminescence substrate detection kit (Pierce, Rockford, IL), followed by blot imaging and quantification with the Bio-Rad ChemiDoc Imaging System and Image Laboratory Software version 5.2.1 (Bio-Rad), respectively.
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7

Targeting PLK1 and Apoptosis Regulators

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The PLK1 inhibitor, volasertib, was purchased from Selleck Chemicals (Houston, TX, USA). Antibodies against PLK1 (4513), Bcl‐2 (2876), Bcl‐xl (2762), cleaved caspase‐3 (9664), PARP (9542), CD44 (3570), CD133 (64326), NANOG (4903), Cyclin B1 (4135), phospho‐Bad (9295), Bad (9292) and GAPDH (5174) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against FoxM1 (sc‐376 471) and caspase‐3 (sc‐56 053) were purchased from Santa Cruz Biotechnology, Inc. Cyclin D1 (ab139260) was obtained from Abcam (Cambridge, MA, USA). Phospho‐CDK1/CDC2 (orb127843) was purchased from Biorbyt Ltd (Cambridge, UK).
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8

Histological Analysis of Heart Tissue

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Parts of the heart were fixed with 4% paraformaldehyde and then wax embedded and sectioned (5 μm thick) for hematoxylin and eosin staining (H&E, Invitrogen, Carlsbad, CA, USA), as previously described [54 (link)]. The lipid content was quantified by Oil Red O staining (Bio Vision, Catalog # K58024, Mountain View, CA, USA). After staining with hematoxylin and washing with dH2O, the section samples were washed and treated with 60% isopropanol for 5 min each time with gentle rocking. Thereafter, the section samples were extracted after Oil Red O staining with 100% isopropanol for 5 min with gentle rocking. Immunohistochemical staining was used to measure autophagic or apoptotic protein expression, with tissue sections (5 μm thick) incubated in blocking buffer (0.5% BSA, 0.05% Tween 20, and PBS) for 1 h at room temperature, followed by specific primary antibodies against BNP (1:100, sc-271185, Santa Cruz), cytochrome c (1:100, sc-13156, Santa Cruz), and caspase 3 (1:100, sc-56053, Santa Cruz) for 1 h at room temperature. The antibody staining was developed using a diaminobenzidine (DAB) detection system (Catalog # 760124, Ventana Medical Systems, Tucson, AZ, USA) according to the manufacturer's protocol, counterstained with hematoxylin, and examined under a microscope (Nikon E600, Japan).
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