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Stepone

Manufactured by Bio-Rad
Sourced in United States

The StepOne is a real-time PCR (polymerase chain reaction) system designed for DNA and RNA quantification. It provides accurate and reliable results for a wide range of applications, including gene expression analysis, pathogen detection, and SNP (single nucleotide polymorphism) genotyping. The StepOne system offers a compact and user-friendly design, making it a versatile tool for research and diagnostic laboratories.

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3 protocols using stepone

1

Quantitative Analysis of let-7a and AURKB in Osteosarcoma

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The RNA was extracted from fresh OS tissues, adjacent non-tumor tissues, OS cells and hFOB1.19 cells using the Qiagen RN easy FFPE protocol (Qiagen NV, Venlo, the Netherlands). The expression level of let-7a and AURKB was evaluated by qRT-PCR (StepOne; Bio-Rad Laboratories Inc., Hercules, CA, USA), and U6 snRNA and GAPDH were used as endogenous references. Total RNA in OS cells or tissues was extracted using TRIzol (Thermo Fisher Scientific). Reverse transcription was performed using Prime Script RT Reagent Kit (Takara Bio, Inc., Otsu, Japan) according to the manufacturer’s protocol. Then, each sample was analyzed by qPCR under the conditions described in the manufacturer’s instructions for SYBR Premix Ex Tap II (Thermo Fisher Scientific): 50°C for 2 minutes, 95°C for 2 minutes, followed by 40 cycles at 95°C for 15 seconds and 60°C for 30 seconds. Relative expression was calculated using the 2−ΔΔCt method. All of primer sequences are summarized in Table 1.
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2

Quantitative RT-PCR analysis of human islet genes

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Total RNA was isolated from cultured human islets using TriFast (peqGOLD; Peqlab) or TriPure (Roche) for FAC-sorted cells according to the manufacturer’s instructions. 500ng to 1μg of RNA were reverse transcribed using the RevertAid RT Reverse Transcription Kit (ThermoFisher) according to the manufacturer’s protocol, including removal of genomic DNA with DNase I prior to reverse transcription. Quantitative RT-PCR was performed as previously described [31 (link)]. StepOne Real-Time PCR system (Applied Biosystems, CA, USA) or CFX96 Real Time System (BioRad, CA, USA) with TaqMan® Fast Universal PCR Master Mix for TaqMan assays (Applied Biosystems) were used for analysis. TaqMan® Gene Expression Assays were used for human LDH-A (#Hs01378790_g1), PPiA (#Hs99999904_m1), ACTB (#Hs01060665_g1), GCG (#Hs01031536_m1), and INS (#Hs02741908_m1). qPCR was performed and analyzed by the Applied Biosystems StepOne or the BioRad CFX96 Real-Time Systems. The ΔΔCT or ΔCT methods were used to analyze the relative changes in gene expression.
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3

Chromatin Immunoprecipitation Assay Protocol

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ChIP assays were performed according to the manufacturer’s protocol (Millipore). Briefly, cells were fixed with 1% formaldehyde, and chromatin was sheared by sonication to 300–500 bp. Chromatin was immunoprecipitated with control IgG or specific antibodies (p65, CHD1, and H3K36Me3 [MABI0333; MBL]) overnight at 4 °C and then incubated with protein A-agarose-salmon sperm DNA (Millipore) for an additional 2 h. After washing and elution, protein-DNA crosslinks were disrupted by heating at 65 °C overnight. Immunoprecipitated DNA was purified with QIAquick spin columns (Qiagen) and analyzed by qPCR with a StepOne (Bio-Rad Laboratories, CA, USA) using Light Cycler SYBR Green I Master Mix (Takara Bio). Relative quantification was performed using the 2-ΔCT method, where ΔCT is the difference between the mean CT value of triplicates of the sample and that of the input control. Primer sequences are shown in Supplementary Table.
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