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Pcr array kit

Manufactured by Qiagen
Sourced in Germany

The PCR array kit is a laboratory equipment designed for gene expression analysis using the polymerase chain reaction (PCR) technique. It provides a pre-configured set of primers and probes to simultaneously measure the expression levels of multiple genes in a single sample.

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6 protocols using pcr array kit

1

mRNA Extraction and qPCR Analysis of Mitochondrial Energy Metabolism in Myocardial Tissue

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Myocardial tissue samples were homogenized in TRI Reagent (1 mL), and 200 μL chloroform was added. The sample was centrifuged at 12 000 g (4°C, 15 min), and the supernatant was transferred to a sterile centrifuge tube. Isopropanol (500 μL) was added to the supernatant, mixed, and then centrifuged again at 12 000 g (4°C, 10 min). The upper layer of transparent liquid was removed and 1 mL of 75% ethanol was added. This step was repeated 5 to 10 times. After the final ethanol wash, the sample was centrifuged at 7600 g (4°C, 5 min), placed at room temperature for 3 to 5 min, air dried, and dissolved in RNase-free water (30 μL).
mRNA was reverse transcribed to synthesize cDNA, followed by PCR. Each PCR assay used 1 μg RNA per 20 μL reaction. The experiment was performed according to the manufacturer’s instruction (PCR array kit: Mouse Mitochondrial Energy Metabolism, SABiosciences, Qiagen, PAMM-008Z). Briefly, every reaction was performed using 10 ng cDNA per 25 μL reaction volume. Quantitative PCR was performed under the following conditions: 95°C 10 min; 40 cycles of 95°C, 15 sec and 60°C, 1 min. The assays were performed on a Bio-Rad CFX ConnectTM Real-Time PCR Detection System. The qPCR master mix (QIAGEN, 330 523) was used for qPCR assay.
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2

Synaptic Plasticity Genes in Alzheimer's

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A PCR array kit (Qiagen, Germany; catalog # PAM126Z) was used to assess expression of 84 genes involved in mechanisms of synaptic plasticity, using cDNA obtained from hippocampi of AdFNDC5-infected (or AdGFP-infected) mice subsequently infused i.c.v. with AβOs (or vehicle). Hippocampi were dissected 7 days after AβO injection. The assay was conducted following manufacturer’s instructions, and results were initially analyzed using Volcano plots. Independent validation of differentially expressed genes was carried out by qPCR. Statistical significance of changes in expression was assessed using 2-way ANOVA.
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3

Skeletal Muscle Differentiation PCR Array

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A PCR array kit (QIAGEN, Hilden, Germany, #330231 PAMM-099ZA), containing 84 key genes associated with skeletal muscle differentiation, function, and disease was used. The PCR array experiments were carried out according to the manufacturer’s recommendations. Approximately 1 µg of cDNA was used for one 96-well array plate. The PCR array was performed based on SYBR Green chemistry in a QuantStudio™ 7 Flex Real-Time PCR system (Thermo Fisher Scientific). All PCR array experiments were performed in triplicate, and the relative expression was calculated using the delta–delta CT method, as previously described [40 ].
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4

Systematic Gene Profiling of Cancer Pathways

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Systematic gene profiling was accomplished using Qiagen’s PCR array kit, according to the manufacturer’s protocol. Briefly, RNA from cell pellets were extracted and quantified. cDNA synthesis was performed using the RT2 First Strand Kit (Cat. No. 330401; Qiagen, GmbH), and subsequently combined with the RT2 SYBR® Green PCR master mix (Cat. No. 330504; Qiagen, GmbH). The master mix was then used in combination with the Human Cancer PathwayFinder RT2 lncRNA PCR Array (Cat. No. LAHS-002Z; Qiagen, GmbH), and the output data was analyzed using the GeneGlobe Data Analysis Center at http://www.qiagen.com/geneglobe.
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5

Profiling Wnt Signaling Genes in FaDu Cells

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The profiling of genes was performed using Qiagen’s PCR array kit, according to the manufacturer’s protocol. Briefly, FaDu cells were transfected with miR-503, and the RNA was extracted and quantified as previously described. The cDNA synthesis was performed using Qiagen’s RT2 First Strand Kit (Cat. No. 330401) and combined with the RT2 SYBR® Green PCR master mix (Cat. No. 330504). The master mix was then added to the Qiagen’s RT² Profiler™ PCR Array Human WNT Signaling Targets (Cat. No. PAHS-243Z) PCR array and the GeneGlobe Data Analysis Center was used to quantify the results. A cut-off value of |FR| ≥ 2 was set to differentiate between the significantly dysregulated genes.
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6

Synaptic Plasticity Genes in Alzheimer's

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A PCR array kit (Qiagen, Germany; catalog # PAM126Z) was used to assess expression of 84 genes involved in mechanisms of synaptic plasticity, using cDNA obtained from hippocampi of AdFNDC5-infected (or AdGFP-infected) mice subsequently infused i.c.v. with AβOs (or vehicle). Hippocampi were dissected 7 days after AβO injection. The assay was conducted following manufacturer’s instructions, and results were initially analyzed using Volcano plots. Independent validation of differentially expressed genes was carried out by qPCR. Statistical significance of changes in expression was assessed using 2-way ANOVA.
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