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4 protocols using β catenin

1

Quantification of Ryk Protein and mRNA Levels

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Western blots were performed using anti-actin antibody (clone C4; Millipore, Temecula, CA), mouse RYK antibody (R&D Systems), active β-catenin (Cell Signaling Technology, Danvers, MA) and β-catenin (Bethyl, Montgomery, TX), visualized with ECL (SuperSignal West Femto, Thermo Fisher Scientific) and quantified by LAS3000 software.
For RT-PCR analysis, RNA was purified from mMSCs and converted to cDNA using SuperScript III Reverse Transcriptase (Invitrogen, Thermo Fisher Scientific) and amplified using specific primers for mRyk (5′-ATC CTA CCT TGC GGA TGA AG-3′, 5′-CAT CAT CGT CAC CTG AAC TT-3′), Ryk-ICD (5′-TCC AAG GTA CTT TTG GGC G-3′, 5′-TGT CCC CTA GGC AGT GGT AG-3′) and Ryk-ECD (5′-CAG TCA CTA CGC TCT GTC CT-3′, 5′-GCT CGA CCC GAA ACA CTG AT-3′). Real-time quantitative PCR (RQ-PCR) was performed with the Rotor-Gene 6000 system (Corbett Life Science, Australia) and SYBR Premix Ex Taq (TaKaRa, Japan). Relative levels of PCR products were determined after normalization to an endogenous Gapdh control.
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2

Antibody Immunoblotting Protocol

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The antibodies were obtained commercially from various sources – 1) Cell Signaling and Technology -Lamin A/C ( #4777); EpCAM (#2626S); DNMT1 (#5032P); HDAC1 (#5356P); G9a (3306S); Snail1 (3879P); α4-Integrin (#8440S); β-actin (#4970S); Di, Tri-methyl histone H3 (Lys9) (#5327) 2) Thermoscientific – UHRF1 (PA5-27969) 3) BD Biosciences – E-cadherin (610181); p120-catenin (610133); β-catenin (610154) 4) Bethyl laboratories – MARVELD2 (A301-505A) and 5) Sigma/Aldrich – β-tubulin (T0198).
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3

Antibody Immunoblotting Protocol

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The antibodies were obtained commercially from various sources – 1) Cell Signaling and Technology -Lamin A/C ( #4777); EpCAM (#2626S); DNMT1 (#5032P); HDAC1 (#5356P); G9a (3306S); Snail1 (3879P); α4-Integrin (#8440S); β-actin (#4970S); Di, Tri-methyl histone H3 (Lys9) (#5327) 2) Thermoscientific – UHRF1 (PA5-27969) 3) BD Biosciences – E-cadherin (610181); p120-catenin (610133); β-catenin (610154) 4) Bethyl laboratories – MARVELD2 (A301-505A) and 5) Sigma/Aldrich – β-tubulin (T0198).
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4

LZRS-HOTAIR Inducible Cell Lines

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LZRS-HOTAIR was developed in Dr. Howard Chang's laboratory [21 (link)] and purchased from Addgene (Cambridge, MA). β-catenin/S37A cDNA was a kind gift from Dr. Susan Waltz. MCF-7, T47D, BT474, MDA-MB-468, MDA-MB-231, ZR-75–1, and SK-BR3 cell lines were purchased from American Type Culture Collection (ATCC) previously. They have not been authenticated recently. SUM159 and HCC1806 were kind gifts from Dr. Sang-Oh Yoon. All cells except SUM159 and HCC1806 were grown in DMEM/F12 (1:1) with 10% fetal bovine serum. SUM159 cells were cultured in DMEM/F12 (1:1) with 5% fetal bovine serum and hydrocortisone (1 μg/ml). HCC1806 were cultured in RPMI-1640 with 1% FBS. The following antibodies were purchased: α-tubulin (Sigma); β-catenin (Bethyl), c-Myc (Pierce); lamin B (Santa Cruz), EGFR, CrkL, and phospho-Y207-CrkL (Cell Signaling). Lapatinib and imatinib were purchased from LC Laboratories. Tetracycline-inducible shRNA of HOTAIR and the control shRNA of scrambled sequences were constructed by annealing the corresponding oligonucleotides (100 μM for each strand denatured at 95°C for 10 min then cooled down to room temperature). The duplex inserts were amplified by PCR followed by cloning to the pCR2.1-TOPO vector (Invitrogen). The inserts were then subcloned to the pInducer-10 vector between the EcoR1 and Xho1 sites.
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