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8 protocols using etoac

1

Comprehensive Lipidomics Analytical Protocol

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IPA, MeOH, 1-BuOH, heptane, formic acid, and H2O were purchased from ThermoFisher Scientific (Waltham, MA, USA). EtOAc was obtained from VWR (Randor, PA, USA). MTBE was purchased from Sigma–Aldrich (St. Louis, MO, USA). All solvents were HPLC grade or higher. Ammonium formate was obtained from Optima (Douglas, GA, USA). The composition of the used stable isotope-labeled internal standard (SIL-ISTD) mixture is listed in Table 1. ISTD belonging to (lyso)PC, (lyso)PE, phosphatidyl glycerol (PG), CE, sphingomyelins (SM), monoglycerides (MG), diglycerides (DG), and TG classes were obtained as a mixture (Splash) from Avanti Polar Lipids (Alabaster, AL, USA). AcCa, acylethanolamines (AEA), Sph, Cer, and coenzyme Q (CoQ) standards were purchased from Cayman (Ann Arbor, MI, USA), while the GlcCer standard was obtained from Avanti.
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2

Fungal Extraction and UPLC-QToF-MS/MS Analysis

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EtOAc (used for fungal extraction) was purchased from VWR International GmbH, Hannover, Germany. UPLC grade methanol, acetonitrile and water used for UPLC/MS analysis were purchased from BiosolveChimie, Dieuze, France. Formic acid (UPLC/MS optigrade) was obtained from LGC Standards Promochem©, Wesel, Germany. UPLC-QToF-MS/MS analyses were carried out on an ACQUITY UPLC I-Class System coupled to the Xevo G2-XS QToF Mass Spectrometer (Waters®, Milford, MA, USA). Czapek broth, yeast extracts and malt extracts were purchased from BD Bioscience, Sparks, NE, USA. Agar was purchased from Applichem, Darmstadt, Germany. Peptone from soymeal and glucose were purchased from Merck, Darmstadt, Germany. Potato extract was from Sigma-Aldrich, Schnelldorf, Germany. Sucrose was purchased from Handelsmarken, Offenburg, Germany. Casein hydrolysate was purchased from Carl Roth, Karlsruhe, Germany.
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3

Solvent Extraction and FCPC Analysis

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Solvents used for extraction and fast centrifugal partition chromatography (FCPC), such as ethyl acetate (EtOAc), n-hexane (Hex), methanol (MeOH), and ethanol (EtOH) were of analytical grade and were purchased from VWR Chemicals (Prolabo®, Fontenay-sous-Bois, France). The water (H2O) used for chromatographic separations was of ultrapure grade produced by Milli-Q water (1.8 MΩ) equipment (Merck®, KGaA, Darmstadt, Germany). Acetonitrile (ACN) used for high-performance liquid chromatography (HPLC) and chloroform (CHCl3) used to determine optical rotation were of HPLC grade and were purchased from VWR® (Madrid, Spain). Deuterated chloroform (CDCl3) was used to prepare solutions of the isolated compound for nuclear magnetic resonance (NMR) analyses and purchased from VWR® (Madrid, Spain). Acetic acid (AcOH) used for HPLC was purchased from VWR® (Madrid, Spain).
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4

Analytical Techniques for Natural Product Extraction

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Solvents used for extraction, analytical thin-layer chromatography (TLC), column chromatography (CC) and fast centrifugal partition chromatography (FCPC), such as diethyl ether (Et2O), ethyl acetate (EtOAc), n-hexane (Hex), dichloromethane (DCM) and ethanol (EtOH) were of analytical grade and were purchased from VWR Chemicals (Prolabo®, Fontenay-sous-Bois, France). Water (H2O), used for chromatographic separations, was of ultrapure grade and was produced by Milli-Q water (1.8 MΩ) equipment (Merck®, KGaA, Darmstadt, Germany). Acetonitrile (ACN) and methanol (MeOH), used for high-performance liquid chromatography (HPLC), and chloroform, used to determine optical rotation values, were of HPLC grade and were purchased from VWR® (Madrid, Spain). Deuterated chloroform (CDCl3) was used to prepare solutions of isolated compounds for nuclear magnetic resonance (NMR) analysis and were purchased from VWR® (Madrid, Spain). Acetic acid (AcOH), used for HPLC, was purchased from VWR® (Madrid, Spain). Silica gel 60 F240 precoated aluminum sheets were purchased from Merck® (Darmstadt, Germany). N-methylurea, used to prepare N-methyl-N-nitrosourea (see Supplementary Material), was purchased from Sigma-Aldrich® (Madrid, Spain). Sodium hydroxide was purchased from VWR Chemicals® (Prolabo, Fontenay-sous-Bois, France).
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5

Extraction and Quantification of Fungal Metabolites

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The entire solid cultures were sliced into small pieces with a flat spatula and transferred into 250 mL glass flasks. 100 mL of ethyl acetate (EtOAc, PESTINORM, VWR Chemicals, Leuven, Belgium) was added and the mixture was homogenized with an Ultra-Turrax at 19,000 rpm before filtering through a folded cellulose membrane filter (type 113P, Rotilabo®ROTH, Karlsruhe). The filtrate was collected into a glass separating funnel and washed with 100 mL of Milli-Q®water (Arium®Lab water systems, Sartorius) to remove salts and water-soluble compounds. A total of 100 mL of crude EtOAc extract was collected and evaporated to dryness by a rotary evaporator (150 rpm at 40°C). Dried extracts were re-dissolved in 3 mL of UPLC/MS grade methanol (MeOH) and pipetted into a pre-weighed 4 mL-amber glass vial through a 13 mm syringe filter w/0.2 μm PTFE membrane (VWR International, Darmstadt, Germany). After drying the extracts under a nitrogen atmosphere, vials were weighed to determine the extract amount. The extracts were stored at -20°C.
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6

Isolation and Purification of 6-Pentyl-α-Pyrone

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6-Pentyl-α-pyrone was isolated from Trichoderma atroviride strain P1 according to the method previously described [18 (link)]. Briefly, five 10 mm Ø plugs, obtained from actively growing P1 cultures, were injected into 5 L conical flasks which contained 2.5 L of potato dextrose broth (PDB, HI-MEDIA, Pvt. Ltd., Mumbai, India). Two static cultures were then incubated, at 25 °C, for 30 days, and subsequently filtered under vacuum by a filter paper (Miracloth).
Culture filtrates (5L) were subjected to extraction using ethyl acetate (EtOAc, VWR International, LLC, Milan, Italy). The organic phase was first dried with sodium sulfate anhydrous (Na2SO4, VWR International), then evaporated under vacuum at 37 °C. Purification of 6 PP was achieved by flash column chromatography (with stationary phase containing silica gel, 100 g) using an elution gradient based on petroleum ether (Carlo Erba, Milan, Italy) and EtOAc (0–100% EtOAc). Characterization of purified 6 PP was achieved by gas chromatography-mass spectrometry (GC-MS) analysis according to the method previously reported [25 (link)].
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7

Analytical Standards for Cannabis Compounds

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cannabidiolic acid (CBDA), cannabigerolic acid (CBGA), cannabigerol (CBG), and cannabidiol (CBD) standard solutions (1 mg/mL in methanol or acetonitrile) were purchased from Cerilliant (Round Rock, TX, USA). Chrysoeriol was purchased from Sigma-Aldrich (Milan, Italy), while canniprene was kindly provided by Dr. Federica Pollastro of the Department of Drug Sciences of the University of Piemonte Orientale (Novara, Italy). Formic acid (HCOOH) and HPLC-grade solvents, including EtOH, MeOH, ACN, acetone, EtOAc, n-hexane, DCM, ethyl ether and toluene, were from VWR (Milan, Italy). H2O was purified by using a Milli-Q Plus185 system from Millipore (Milford, MA, USA).
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8

LignoBoost Kraft Lignin Characterization

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Softwood (SW) LignoBoost Kraft lignin as
a fine powder was kindly donated by Stora Enso (Finland). Ethyl acetate
(EtOAc, ≥99%), ethanol (EtOH, ≥99.8%), methanol (MeOH,
≥99.8%), acetone (≥99.5%), and hydrochloric acid (HCl,
37%) were purchased from VWR International. Lithium hydroxide (LiOH,
>98%), DAC (99%), tetrabutylammonium bromide (TBAB, 98%), cyclohexane
(99.5%), and trimethylolpropane tris(3-mercaptopropionate) (3TMP,
≥95%) were purchased from Sigma-Aldrich. Magnesium sulfite
(MgSO4, 99%) was purchased from Thermo Scientific Chemicals.
Silastic T-2 base/curing agent (10:1 w/w) was used to prepare the
silicone molds. It was obtained from Dow Corning. All other chemicals
were purchased from Sigma-Aldrich and used as received.
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