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45 protocols using chamber slide

1

Immunostaining of CD24 in Cells

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Cells were seeded onto chamber slides (Merck Millipore Ltd., Watford, UK) at 3 × 104 cells/chamber for 48 h where after fixing with 4% paraformaldehyde (Histolab Products AB, Västra Frölunda, Sweden) in PBS for 5 min at room temperature (RT). Fixed cells were washed twice with PBS. After washing with PBS, the slides were blocked with 1% BSA for 45 min before incubated with CD24 (Invitrogen, #MA5–11833) diluted in 1% BSA/PBS overnight. Cells were washed three times with PBS, followed by incubation with Alexa Fluor 568 conjugated anti-mouse (Invitrogen #A11004) dissolved in 1% goat serum/1% BSA for 1 h at RT. After washing three times with PBS, the coverslips were stained with DAPI (Sigma-Aldrich) for 3 min. Stained cells were washed twice with PBS and once with water before cells were mounted on cover glass slides with prolong diamond anti-fade mountant media (Life Technologies, Carlsbad, CA, USA). Cells were examined under a Zeiss Axio Vert.A1 microscope (Carl Zeiss, Oberkochen, Germany) at ×5 magnification.
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2

Metformin and Phenformin Regulate TGF-β Signaling

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Metformin and phenformin were purchased from Sigma-Aldrich (St. Louis, MO, USA); human TGF-β1 and antibodies against β-actin, p-AMPKα Thr172, AMPKα, p-ACC Ser79, ACC, Slug, p-Smad3 Ser423/425, and Smad2/3 were from Cell Signaling Technology (Beverly, MA, USA); ELISA kits for human and mouse TGF-β1, antibodies against E-cadherin, and vimentin were from Abcam (Cambridge, MA, USA); monoclonal antibody against LKB1 was from Santa Cruz Biotechnology (Santa Cruz, CA, USA); growth factor-reduced Matrigel and monoclonal antibody against β-catenin were from BD Biosciences (San Jose, CA, USA); Lipofectamine 2000, 4′,6-diamidino-2-phenylindole (DAPI), fluorescein isothiocyanate (FITC)-conjugated donkey anti-rabbit antibodies were from Life Technologies (Grand Island, NE, USA); Chamber slides was from EMD Millipore (Billerica, MA, USA).
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3

PD-L1 Immunofluorescence Staining of Breast Cancer Cells

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MDA-MB-231, BT-474, SK-BR-3 and JIMT-1 BC cell lines were cultured in chamber slides (Merck-Millipore, Darmstadt, Germany) up to a confluence of 90%. Immunofluorescence staining was performed according to manufactures protocol of the primary anti-PD-L1 antibody (Cell Signaling). In brief, the medium was removed and the cells were washed with PBS, PBS was discarded, ice-cold 100% methanol was added and incubated for 10 min at −20 °C. Then the slides were rinsed with PBS for 5 min and incubated with blocking buffer for 60 min. The blocking buffer was aspirated afterwards and the primary anti-PD-L1 antibody (1:100) (D8T4X, Cell Signaling, Danvers, MA, USA) or the isotype control (1:833) (DA1E, IgG XP® Isotype Control, Cell Signaling, Danvers, MA, USA) were applied in appropriate dilution for overnight incubation at 4 °C. After a 3 × 5 min washing step with PBS, the slides were incubated for 1 h at room temperature in the dark with goat anti-rabbit IgG AlexaFluor 532 secondary antibody (1:500) (Thermo Fisher Scientific, Bremen, Germany). The slides were washed again (3 × 5 min) with PBS and were cover-slipped with VECTASHIELD Antifade Mounting Medium with DAPI (VECTOR Laboratories Inc., Burlingame, CA, USA).
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4

Subcellular Localization of AR by IFM

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Subcellular localization of AR post-treatment with SFN was visualized by immunofluorescence microscopy (IFM). Briefly, cells (3×104) were seeded in chamber slides (EMD Millipore) and allowed to adhere overnight. After treatment, cells were fixed in ice cold methanol followed by permeabilization with 0.1% Triton X-100 for 1 h. After blocking in 10% goat serum, slides were incubated overnight at 4°C with the primary antibody (1:300 dilution) followed by incubation with the corresponding Texas Red tagged secondary antibody (1:1,000 dilution) for 1 h. The Vectashield (Burlingame, CA) mounting medium containing the nuclear stain diamino-2-phenylindole (DAPI) was then added to the slides and cover slips were mounted. Images were captured using a fluorescent microscope from Leica Microsystems Inc.
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5

Tissue Fixation and Immunocytochemical Analysis

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Freshly resected tumours were fixed overnight in 4% PFA/PBS. The next day, tumours were moved to a 30% sucrose solution for an additional 24 h before embedding in OCT. Cryosections were mounted in Vectashield containing DAPI and immediately viewed and photographed using a Nikon Eclipse Ti-E inverted microscope and NIS-Elements software package. For immunocytochemistry, cells were seeded in chamber slides (EMD Millipore) for 48 h, washed with PBS, and fixed with 4% formaldehyde for 10 min at room temperature before blocking and staining overnight with primary antibodies. After secondary antibody labelling and washing, slides were mounted and images were captured as described above.
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6

Visualizing Androgen Receptor Localization

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Immunofluorescence microscopy (IFM) was used to visualize subcellular localization of AR post exposure to CDDO-Me. In brief, cells (3 × 104) were cultured in chamber slides (EMD Millipore; Billerica, MA, USA) and then fixed in ice cold methanol after treatment. After permeabilization of the cells with 0.1% Triton-X 100, blocking was done in 10% goat serum. The cells were then incubated with the primary antibody (1:300 dilution) overnight at 4 °C. This was followed by incubation with the corresponding secondary antibody tagged with texas red (1:1000 dilution) for 1 h. The cover slips were mounted after nuclear stain diamino-2-phenylindole (DAPI) containing vectashield mounting media (Burlingame, CA, USA) was added to the slides. The images (60× magnification) were captured with the fluorescent microscope (Leica Microsystems; Buffalo Grove, IL, USA).
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7

Quantifying Tryptase-Induced Epithelial Cell Responses

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Bronchial and alveolar epithelial cells were cultured in chamber slides (Merck Millipore, Darmstadt, Germany) until 70–80% confluency and then treated with tryptase for 24 h. Samples were fixated in 2% paraformaldehyde for 20 min and washed in PBS. For the staining, samples were permeabilized in 0.1% Tween-20 for 10 min and immunostained with primary antibody cIAP-2/BIRC3 (Thermo Fisher Scientific, Waltham, MA, USA, PA551700) diluted 1:50, or Ki67 1:300 (M7240, Dako, Denmark), and thereafter incubated with Alexa Fluor 488 (Invitrogen, Eugene, OR, USA) diluted 1:200. ProLong Glass antifade with NucblueTM (Thermo Fisher Scientific, Waltham, MA, USA, P36983) was used for mounting and nuclei visualization. A Nikon eclipse 80i combined with Nikon DS-QI1MC was used to capture images and Image-J was used for data analysis. Data are shown as positive pixels per quantified cell nuclei. The magnification of the immunostaining was visualized using a Nikon A1+ confocal microscope with a 20× Plan Apo objective, NA 0.75 (Nikon Instruments Inc., Tokyo, Japan), and acquired using NIS-elements, version: 4.60.02 (Laboratory Imaging, Nikon, Tokyo, Japan). All image captures were taken with identical settings.
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8

Immunostaining of uPAR in Scratch-Wounded A549 Cells

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A549 were cultured in chamber slides (Merck Millipore, Darmstadt, Germany) until 60% confluency or 90% confluency for scratch treatment. Tryptase and chymase were added and samples were fixated in 2% paraformaldehyde for 20 min post 24 h addition. For scratch staining, the samples were wounded with a single cut using 200 μL pipette tip prior to addition of proteases. Thereafter, samples were incubated with 0.1% Tween-20 for 10 min. Samples were immunostained with Primary antibody diluted 1:50, uPAR (Cell Signaling, D7X2N) and thereafter labelled with Alexa Fluor 488 or Alexa Flour 647 diluted 1:200 (Invitrogen, Eugene, OR, USA). For double immunostaining of uPAR in relation to the cytoskeleton arrangement, FITC conjugated phalloidin (Sigma-Aldrich, St Louis, MO, USA) was added and diluted 1:1000 post removal of secondary Alexa Fluor antibody. ProLong Glass antifade with NucblueTM (Thermo Fisher Scientific, Waltham, MA, USA, P36983) were used for mounting and nuclei visualization. A Nikon eclipse 80i combined with Nikon DS-QI1MC was used to view and document images.
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9

Quantification of Thermogenic Adipocytes

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Fibro/adipogenic progenitors were grown and differentiated on chamber slides (Sigma). At Day 10 of differentiation, cells were fixed, permeabilized, and incubated overnight with rabbit anti‐UCP1 (Abcam, Cambridge, UK, 1:500 dilution), followed by incubation with Alexa 488 anti‐rabbit IgG and DAPI. Slides were posteriorly analysed with a confocal laser scanning microscope (SP5 Resonant APD, Leica, Wetzlar, Germany).
For quantification of differentiated and UCP1+ cells, FAPs were seeded and differentiated into a 96‐well plate and posteriorly fixed and stained with LD540 (lipid droplets), Hoechst (nuclei), and rabbit anti‐UCP1 (Abcam, 1:500 dilution) followed by incubation with Alexa 488 anti‐rabbit IgG; 17 pictures were taken per well using an automated microscope imaging system (PerkinElmer Operetta High Content Imaging System, Perkin Elmer, Waltham, MA, USA).
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10

Isolation and Seeding of Primary Chondrocytes

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Human primary OA chondrocytes or synovial fibroblasts grown overnight were washed twice with PBS, gently detached using 5 mM EDTA in PBS, and seeded into chamberslides (Falcon, Thermo Fisher) for subsequent immunofluorescence stainings or into petri dishes for cell surface biotinylation. chamberslides and petri dishes were coated with bovine fibronectin (2 μg/ml, Sigma-Aldrich) for 1h at 37°C or at 4°C overnight.
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