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Abi 7300 thermal cycler

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI 7300 thermal cycler is a laboratory instrument used for the amplification of DNA samples through the polymerase chain reaction (PCR) process. It precisely controls the temperature and timing of the thermal cycling steps required for DNA replication. The ABI 7300 features a 96-well sample block and supports real-time PCR detection. It is designed to provide accurate and reliable performance for a variety of PCR applications.

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20 protocols using abi 7300 thermal cycler

1

Gene Expression Analysis of Liver and Pancreatic Tissues

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Liver tissues and αTC1–6 cells were homogenized in Sepasol-RNA I Super G solution (Nacalai Tesque), and total RNA was isolated using a conventional phenol-chloroform-based RNA extraction method. Pancreatic islet RNA was purified with an RNeasy Micro Kit (Qiagen, Valencia, CA). cDNA was prepared using a PrimeScript RT reagent kit and gDNA Eraser (RR047A; TaKaRa Bio, Inc., Shiga, Japan). Quantitative PCR (qPCR) was performed using SYBR Premix Ex Taq II (RR820A; TaKaRa Bio, Inc.) and an ABI 7300 thermal cycler (Applied Biosystems, Foster City, CA). For each gene, mRNA levels were determined by the comparative Cycle threshold (Ct) method (ΔΔCt) and levels of each mRNA were normalized to 18S rRNA or TATA-binding protein (Tbp) mRNA. Primer sequences for Cltrn, Slc2a2, Hnf4a, Hgfac, Agxt, G6pc, Got1, Sglt1, Sglt2, and Slc2a1 mRNAs are listed in Supplementary Table 1.
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2

Quantitative and Microarray Gene Expression Analysis

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Total RNA was extracted using the RNeasy Mini kit (Qiagen). RNA concentration was determined using a NanoDrop Spectrophotometer (Thermo Fisher Scientific Inc.) and 1 μg of total RNA was used for cDNA synthesis. cDNA synthesis was performed using iScript Reverse Transcription Supermix RT‐qPCR (Bio‐Rad, Hercules, CA). Quantitative real‐time PCR was done with SYBR Green PCR Master Mix (Applied Biosystems, Carlsbad, CA) in an ABI 7300 thermal cycler (Applied Biosystems). Non‐reverse transcription reactions served as negative controls. All measurements were normalized for human ribosomal protein RPL13A, β‐actin, and β‐tubulin mRNAs (reference genes). We used linearity curves calibrations in all experiments.
For the Illumina (San Diego, CA) Micro‐array Gene Expression experiment, total RNA was extracted from A549 and H1299 cells as described above. Samples from three independent transfection experiments along with untransfected cells were used for analysis. Gene expression analysis was performed using the HumanHT12 (48,000 probes, RefSeq plus EST) array. Data was analyzed using Genome Studio software (Illumina). Only changes of ±2‐fold or more in gene expression common to the two cell lines were taken into consideration. These changes were confirmed using Q‐PCR.
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3

Quantitative RT-PCR Analysis of MIN6 and Murine Islet

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Total RNA from MIN6 cells was extracted by using Sepasol RNA I Super reagent (Nacalai Tesque). Murine islet RNA was extracted using an RNeasy Micro Kit (Qiagen, Tokyo, Japan). cDNA synthesis was then achieved with a PrimeScript RT reagent kit and gDNA Eraser (RR047A; TaKaRa Bio Inc., Shiga, Japan) according to the manufacturer's instructions. Quantitative real-time PCR (qPCR) was performed using SYBR Premix Ex Taq II (RR820A; TaKaRa) in an ABI 7300 thermal cycler (Applied Biosystems, Foster City, CA). The mRNA value of each gene was normalized to that of TATA-binding protein (Tbp) or that of Actb. The specific primers used are shown in S1 Table.
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4

Quantitative real-time PCR analysis

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Total RNA was extracted using TRIzol reagent (Invitrogen), and complementary DNA was synthesized using a PrimeScript RT kit (TaKaRa, Shiga, Japan). The real-time PCR analysis was performed using an ABI 7300 thermal cycler (Applied Biosystems, Foster City, CA, USA) with SYBR Green Q-PCR Master Mix (TaKaRa). The ΔΔCt method was used to calculate the relative amount of mRNAs with the 36b4 as an internal control. The primer sequences are listed in Table 1.
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5

Quantitative Real-Time PCR Analysis of Lung Gene Expression

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Total RNA was isolated from 50 to 100 mg lung tissue using the QIAGEN RNeasy Mini Kit (catalog #74136). cDNA was prepared using a MMLV Reverse Transcriptase kit (QuantaBio, catalog #95047) and analyzed by PCR on an ABI 7300 Thermal Cycler (Applied Biosystems). Taqman probes and Taqman Universal Master Mix were used as directed (Applied Biosystems, catalog #4304437). Taqmanprobes used were GAPDH (catalog #4331182) and MUC5AC (catalog#4331182). IL-5, IL-13, IL-33, and CCL11 expression levels were quantified using SsoAdvanced Universal SYBR Green (Biorad catalog# 1725271) with the following primers obtained from Integrated DNA Technologies.
TargetForward primer sequenceReverse primer sequence
CCL11TGTAGCTCTTCAGTAGTGTGTTGCTTCTATTCCTGCTGCTCACG
GAPDHGTGGAGTCATACTGGAACATGTAGAATGGTGAAGGTCGGTGTG
IL-33AATCACGGCAGAATCATCGAGAAAGGAGCCAGAGGATCTCCGATT
IL-13CCAGGGCTACACAGAACCCGGCTCTTGCTTGCCTTGGTGG
IL-5ACTGTCCGTGGGGGTACTGTCCTCGCACACTTCTCTTTTTGG
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6

HPV Subtype Detection Protocol

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All subjects underwent gynecological examination, and the cervical shedding cells were collected. The DNA was extracted by using the Genome Extraction Kit (Hybribio Biotech Co. Ltd., Guangdong, China). Then, the DNA was amplified by PCR amplification using a ABI7300 thermal cycler (Applied Biosystems, Foster City, CA, USA). The 21 HPV subtypes were tested with the 21 HPV GenoArray Diagnostic Kit (Hybribio, Chaozhou, China), including 13 high-risk subtypes of 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, and 68; 5 low-risk subtypes of 6, 11, 42, 43, and 44; and 3 Chinese common subtypes of 53, 56, and CP8304.
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7

Isolation and Analysis of Lung RNA

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Total RNA was isolated from 50 to 100 mg lung tissue using the QIAGEN RNeasy Fibrous Tissue Mini Kit (catalog #74704). cDNA was prepared using a SuperScript II RNase H-Reverse Transcriptase kit (Invitrogen Corp., catalog #18064014) and analyzed by PCR on an ABI 7300 Thermal Cycler (Applied Biosystems). Taqman probes and Taqman Universal Master Mix were used as directed (Applied Biosystems, catalog #4304437).
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8

Quantitative gene expression analysis

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Total RNA from mouse kidneys and NRK-52E cells was extracted using the TRIzol reagent (Invitrogen, Carlsbad, CA) and an RNeasy Mini Kit (QIAGEN, Hilden, Germany). cDNA synthesis was then achieved with a Prime Script RT Reagent Kit (Takara). Quantitative real-time PCR (qPCR) was performed using TaqMan probes for mouse Tnfa, Il1b, Il6 (Sigma Aldrich), Ccl2, Cxcl2, Cybb, Ncf1, Sod1, Sod2, Slc22a2, Slc47a1, and Gapdh, and rat Tnfa, Il1b, Il6, Ccl2, Cxcl2, Cybb, Ncf1, and Gapdh (Applied Biosystems, Foster City, CA) in the Light Cycler 480 Sequence Detector System (Roche Diagnostics, Mannheim, Germany), or primers for mouse Sirt1–7, Acox1, Cycs, Cat, and Gapdh with SYBR Premix Ex Taq II (Takara) in an ABI 7300 Thermal Cycler (Applied Biosystems). The results were analyzed statistically based on ΔCT values (Ct gene of interest − CT GAPDH). Relative gene expression was obtained using the ΔΔCt method (Ct sample − Ct calibrator).
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9

Isolation and Analysis of Lung RNA

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Total RNA was isolated from 50 to 100 mg lung tissue using the QIAGEN RNeasy Fibrous Tissue Mini Kit (catalog #74704). cDNA was prepared using a SuperScript II RNase H-Reverse Transcriptase kit (Invitrogen Corp., catalog #18064014) and analyzed by PCR on an ABI 7300 Thermal Cycler (Applied Biosystems). Taqman probes and Taqman Universal Master Mix were used as directed (Applied Biosystems, catalog #4304437).
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10

RT-qPCR Analysis of ITGB1 and FAK Genes

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Total RNA was extracted from the cells with TRIzol (Invitrogen Life Technologies) and reverse transcribed into cDNA with reverse transcriptase from the Primescript RT Reagent kit (Takara Biotechnology Co., Ltd., Dalian, China), as described previously (21 (link)). The RT-qPCR reactions were performed using the Thermal Cycler Dice Real-Time PCR system (Takara Biotechnology Co., Ltd.) and the ABI 7300 Thermal Cycler (Applied Biosystems Life Technologies, Carlsbad, CA, USA) with the following cycling conditions: Initial denaturation at 95°C for 10 min, and 40 cycles of 95°C for 30 sec, 55°C for 30 sec, and 72°C for 2 min. In order to ensure the reproducibility of the results, all the genes were tested in triplicate. The following primers from BGI Tech (Shenzhen, China) were used for the present study: ITGB1, sense 5′-GTCTCAGACTGGCTTCAGTG-3′, antisense 5′-ATGATTGTACCGAGGCTGTC-3′; FAK, sense 5′-GCGGCCCAGGTTTACTGAA-3′, antisense 5′-GGCCTGTCTTCTGGACTCCAT-3′; and β-actin (human), sense 5′-AGGGGCCGGACTCGTCATACT-3′, and antisense 5′-GGCGGCACCACCATGTACCCT-3′. Reaction of each sample was performed in triplicate. Relative expression levels were calculated using the 2-∆∆Ct method.
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