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7 protocols using mouse egf

1

Mammary Tumor Sphere Formation Assay

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FACS-sorted MMTV-Wnt1 tumor cells were cultured in the presence of vehicle or calcitriol in DMEM/F12 medium with 2% B27, 20 ng/ml mouse EGF, 20 ng/mL human FGF (BD, #354060), and 1% antibiotics, and plated on top of solidified Matrigel (28 (link)) for 10–14 days. Spherical colonies (> 50 μm in diameter) were counted using Clono-counter or manually. For the secondary colony formation assay, spheroids were dissociated with 1 mg/mL dispase (Invitrogen, #17105-041) for 30 minutes, digested with trypsin/0.05% EDTA for 5 minutes, and passaged through a 27-G needle five times to dissociate into single cells (29 (link)). After centrifugation, cells were resuspended and cultured as described above. For radiosensitization experiments, sorted TICs were irradiated by 2 Gy and cultured in media containing vehicle or calcitriol for 10–14 days.
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2

Establishment of Rosa-CreERT2 Germline Stem Cell Lines

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MEFs derived from C57BL6 embryos (isolated at day 13.5 post-coitum) were used as feeders for GSC culture. MEF cells treated with mitomycin-C were plated on 0.1% gelatin-coated dishes before GSC culture. Rosa-CreERT2 GS cell line was generated in our lab. To establish Rosa-CreERT2 GSC lines, postnatal mouse testes (day P5) from Rosa-CreERT2 mice were digested into cell suspension and then seed into 12-well plates for colony formation. GSC colony were moved to feeder cells and cultured with StemPro medium (Thermo) supplement with rat glial cell line-derived neurotrophic factor (20 ng ml−1, R&D systems), mouse EGF (20 ng ml, BD Bioscience) and human FGF2 (10 ng ml, Life Technology). To induce CRE activity in GSCs carrying Rosa-CreERT2, 4-OHT (1 μM) was added to the GSC medium at the indicated time points. RA (100 nM; Wako) was used to induce mTORC1 signalling and GSC differentiation. CLQ (10 μM; Sigma-Aldrich) was used to inhibit lysosomal degradation. The 293T cell line (CRL-3216) purchased from ATCC was used for lentivirus production.
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3

Cell Lines and Culture Conditions

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CIN-612-9E cells, primary keratinocytes (HFKs), HFKs transfected with HPV genomes and CaSki spheroids have been described before (10 (link),25 (link)–29 (link)). CIN-612 cells and HFKs were cultured in E Medium supplemented with EGF (mouse EGF(BD) in Fig. 3, human recombinant EGF (Peprotech) in Fig. 1, 2, 4, 5 and 6) and differentiated as described before (26 (link)–29 (link)). CIN-612 cells were routinely (at the time of the experiments) characterized for episomal HPV31 maintenance and differentiation potential in rafts. Cultures were used within 25 passages of acquisition for CaSki and SiHa (bought from ATCC), early passages for HFKs and transfected HFKs. All cultures were routinely tested for mycoplasma and retention of described morphology and growth features. Further, CaSki ex-plants in mice generate tumours as per previous reports (10 (link)). CIN-612 cells were transduced as described earlier (30 (link)) with virions carrying shRNAs against DNMT1 (Origene for Supplementary Fig. 3G, and plasmids described in (30 (link)) Fig. 6J). The HPV16 E6 mutants have been described before (29 (link)).
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4

Lentivirus Production and Endothelial Cell Culture

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Low-passage (P16) 293T cells purchased from the American Type Culture Collection (ATCC, Manassas, VA) were used for the production of lentivirus particles. The MS1 (mouse pancreatic islet) endothelial cell line was also purchased from the ATCC. Immortalized H5V (mouse heart endothelial cells) were previously acquired (23 (link)). 293T, MS1, and H5V cell lines were grown in RPMI supplemented with 10% FBS, 100 IU mL−1 penicillin, and 100 μg mL−1 streptomycin sulfate. HMEC-1 cells, an SV40 transformed human microvascular endothelial cell line (24 (link)), were obtained from the Centers for Disease Control and Prevention (Atlanta, GA) and grown in MCDB 131 media (Invitrogen, Carlsbad, CA) containing mouse EGF (BD, Franklin Lakes, NJ), hydrocortisone (Sigma-Aldrich, St. Louis, MO), 10% FBS, 100 IU mL−1 penicillin, and 100 μg mL−1 streptomycin sulfate and 1x GlutaMax (Invitrogen, Carlsbad, CA). All cell lines used were tested by the University of Pennsylvania Cell Center (Philadelphia, PA) and found to be mycoplasma-free. No other authentication assay was performed.
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5

Endothelial and Ovarian Cancer Cell Cultivation

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HMVEC cells (Lonza) were expanded and used from passage 3–7. Endothelial cells were grown using EGM-2MV media (Lonza) on cell culture plates coated with 0.2% gelatin. HMEC-1 cells, an SV40 transformed human microvascular endothelial cell line 46 (link), were obtained from the Centers for Disease Control and Prevention (Atlanta, GA) and grown in MCDB 131 media (Invitrogen) containing mouse EGF (BD), hydrocortisone (Sigma), 10% FBS, 1% PenStrep and 1× GlutaMax (Invitrogen). Ovarian cancer cell lines were obtained from either from ATCC or were a gift from the laboratory of Carl June developed from primary ovarian tumors. All lines were grown in RPMI containing 10% FBS and 1% PenStrep.
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Endothelial and Ovarian Cancer Cell Cultivation

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HMVEC cells (Lonza) were expanded and used from passage 3–7. Endothelial cells were grown using EGM-2MV media (Lonza) on cell culture plates coated with 0.2% gelatin. HMEC-1 cells, an SV40 transformed human microvascular endothelial cell line 46 (link), were obtained from the Centers for Disease Control and Prevention (Atlanta, GA) and grown in MCDB 131 media (Invitrogen) containing mouse EGF (BD), hydrocortisone (Sigma), 10% FBS, 1% PenStrep and 1× GlutaMax (Invitrogen). Ovarian cancer cell lines were obtained from either from ATCC or were a gift from the laboratory of Carl June developed from primary ovarian tumors. All lines were grown in RPMI containing 10% FBS and 1% PenStrep.
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7

Culturing Tumor Cells on Matrigel

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FACS-sorted tumor cells were suspended in the culture medium consisting of DMEM/F12 (Invitrogen), 20 ng/mL of mouse EGF (BD, #354001), 20 ng/mL of human FGF (BD, #354060), 10 μM of Y-27632 (Sigma, #Y0503) and 1x B27 (Invitrogen, #17504-044), and they were plated on top of solidified matrigel (BD Bioscience, #356237). Then, 100 μL of the cell suspension with 4k cells was put onto the matrigel, and the plate was incubated at 37°C. After 10-14 days, colonieswere counted under an inverted light microscope. To passage, colonies were dissociated with 1 mg/mL of dispase (Invitrogen, #17105-041) and treated with trypsin/0.05 % EDTA (Gibco, #25200) to a produce single cell suspension [27 (link)].
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