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17 protocols using luna 5 μm c18 2

1

Mutant Strain Cultivation and Metabolite Purification

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For structure elucidation, each mutant strain was cultivated in 4 × 1 L LB medium (with the exception of bgc33, which was cultivated on 16 L scale) containing 100 μg/mL of the corresponding antibiotic and incubated at 30 °C (25 °C for bgc33) with shaking at 225 rpm. After 48 hr (28 hr for bgc33), the culture supernatant was extracted 2x with an equal volume of EA, and the solvent was removed from the combined extracts by rotary evaporation. The dried material was dissolved in 80% MeOH/DMSO and separated by reverse-phase HPLC (Agilent 1200 series) for small molecule purification. NMR spectra were collected on either a Bruker Avance DRX500 or a Bruker AvanceIII 600-I spectrometer. Purification of EA fraction was carried on by gradient HPLC on a C18 reverse phase column (Phenomenex Luna 5 μm C18 (2), 250 × 10 mm) with a flow rate of 5.0 ml/min. The gradient system was MeCN (solvent B) and H2O (solvent A).
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2

Quantification of Tribromopyrrole Synthesis

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The activity assay samples were analyzed using an Agilent 1200 series HPLC with a Phenomenex Luna 5 μm C18(2), 100 Å, 150 × 4.6 mm column. The following method was used: 20 min at 52% solvent B, gradient of 52% to 95% solvent B over 1 min, 95% solvent B for 3 min, gradient of 95% solvent B to 52% solvent B over 1 min, and 2 min at 52% solvent B. Solvent A is HPLC grade water + 0.1% trifluoroacetic acid (TFA), and solvent B is HPLC grade acetonitrile + 0.1% TFA. Absorbance was monitored at 220 nm, and the tribromopyrrole product peak was integrated and normalized to the amount produced by WT Bmp8.
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3

Extraction and Purification of A. wentii Metabolites

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A. wentii strains were cultured in 40 mm × 150 mm diameter Petri dishes with a total volume of 2 L of PDA medium at 30 °C for 5 days. The agar was chopped into pieces and extracted with methanol and dichloromethane:methanol (1:1) followed by 1 h of sonication as described above. The residue was extracted three times with EtOAc, and the combined EtOAc layers were evaporated in vacuo to yield a crude extract. Silica gel column chromatography was performed using dichloromethane and methanol as eluent (starting with 100% dichloromethane). Each fraction was further separated through preparative HPLC [Phenomenex Luna 5 μm C18 (2), 250 × 21.2; flow rate of 5.0 mL min−1; UV detector at 280 nm]. Nuclear magnetic resonance (NMR) spectral analysis was performed using a Varian Mercury Plus 400 spectrometer. High-resolution electrospray ionization mass spectra (HRESIMS) were obtained on a Thermo Scientific Q Exactive Hybrid Quadrupole-Orbitrap mass spectrometer at a flow rate of 5 μL min−1. MS conditions included a spray voltage of 5 kV, sheath gas flow rate at 15 au, auxiliary gas flow rate at 5 au, capillary temperature at 320 °C, s-lens RF level 60, scan range of 100.0–500.0 m/z, resolution of 140,000, AGC target of 5 × 105, and maximum injection time of 50 ms.
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4

Purification and Characterization of Tweezer Compounds

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All chemicals in this work were purchased from Sigma-Aldrich,
Fisher Chemicals, VWR, Fluka, Acros Organics, and TCI in commercial
grade. Tweezer compounds were purified by preparative reversed-phase
high-performance liquid chromatography (HPLC) using a Prominence UFLC
system of Shimadzu equipped with the reverse-phase column Luna 5 μm
C18 (2), 100 × 21.20 mm from Phenomenex. The separation was achieved
via a gradient run with acetonitrile/water + 0.1% TFA at a flow rate
of 25 mL min–1 with peak detection at 210 nm. The
Q-TOF mass spectrometer Bruker maXis 4G was used for recording high-resolution
electron spray ionization (ESI) mass spectra. For the analysis, 1
μM tweezer solutions were prepared in methanol.1H, 13C, and 31P NMR spectra were recorded with the
Bruker AVNeo400 (1H = 400 MHz; 13C = 101 MHz,
and 31P = 162 MHz) at 25 °C for every tweezer compound
synthesized in this work. NMR titrations were carried out on the Bruker
DRX 500 (1H = 600 MHz) at 25 °C.
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5

PFAS Analysis in Serum and Placenta

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The targeted analysis of PFAS in the serum and placental tissue samples was performed by high-performance liquid chromatography coupled with tandem-mass spectrometry (HPLC-MS/MS). This analytical system was composed of an Agilent Technologies 1290 Infinity Series (Agilent Technologies, Santa Clara, CA, USA) HPLC and a SCIEX 4000 QTRAP mass spectrometer (AB Sciex Technologies, Framingham, MA, USA) in electrospray ionization (ESI) negative mode. The analytical column was a Luna 5 μm C18(2), 100 × 2 mm (Phenomenex, CA, USA). The eluents were methanol (mobile phase B) and LC-MS grade water, containing 10 mM ammonium acetate (mobile phase A). Details of the LC program are provided in the ESM.
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6

Characterization of Conjugate Materials

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NMR spectra. The conjugates were dissolved in deuterated chloroform and determined by nuclear magnetic resonance spectroscopy (400 MHz 1H NMR and 13 C NMR, Bruker AVANCEZ 400).
Crystallinity. The crystallinity was examined by powder X-ray diffraction (XRD) using a D/MAX 2000 rotating anode X-ray diffractometer (Rigaku Co., Japan) equipped with a Cu-Kα X-ray source (λ = 1.541 nm, 40 kV/100 mA). All the XRD data were collected over a 2θ range from 3° to 40° at a step size of 0.02° at increments for quantitative analysis. Profile fits of the data were performed using Origin 8.5.1.
Polarity. The polarity of all samples was evaluated by high performance liquid chromatography (HPLC), using an LC-20AT liquid chromatograph (SHIMADZU, Japan) and SPD-M20A diode array detector (SHIMADZU, Japan). The determination of these conjugates was carried out on an ODS analytical column (Luna® 5 μm C18 (2), 250 × 4.60 mm, 5 μm; Phenomenex, Torrance, CA, USA) with a column temperature of 40 °C.
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7

Chromatographic Analysis of G. xanthochymus Fruits

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Fruits of G. xanthochymus were obtained
from M/S Alva Pharmacy,
Yogaraja Arogyadhama, Mijar-574225, Dakshina Kannada district, Karnataka,
India. Reverse-phase high-performance liquid chromatography (RP-HPLC)
grade chemicals were procured from Sigma-Aldrich Chemicals Pvt. Ltd.
(St. Louis, USA), whereas all the analytical and laboratory grade
chemicals were procured from Rankem Chemicals (Bengaluru, India),
Sisco Research Laboratories Pvt. Ltd. (Bengaluru, India), and Himedia
Laboratories Pvt. Ltd. (Bengaluru, India). The HPLC column [Luna 5
μm C18 (2)] was procured from Phenomenex (Hyderabad, India).
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8

Purification of Riboflavin-Producing Fungus

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LO11505 was cultivated in 25 Petri dishes (150 mm diameter) containing a total of 2 L of YAG medium supplemented with riboflavin (2.5 mg L−1) for 3 days at 37°C. The agar was then chopped up and sonicated in the same manner as above. The organic material was evaporated and extracted twice with ethyl acetate. The crude material was subjected to silica gel column chromatography, using ethyl acetate and hexanes as the eluent. The material was further separated by preparative HPLC [Phenomenex Luna 5 μm C18 (2), 250 × 21.2] with a flow rate of 5.0 mL min−1 and measured by a UV detector at 280 nm.
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9

Withanolide Stability in GSH and NAC

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Solution A (0.5 mL) containing 2.12 μM withanolide (1, 2a, 3, 5, 7, 8, 11, 12, or 19) in DMSO was mixed with solution B (0.5 mL) containing 4.24 μM GSH (or NAC), and the mixture was incubated at 37 °C. The test samples (100 μL/each) were withdrawn at the time points 0.0, 0.5 2.0, 4.0, 8.0, and 24.0 h and were stored at −80 °C for subsequent HPLC analysis. All analyses were performed on a HPLC system equipped with a Hitachi AS-4000 Intelligent autosampler, Hitachi L-6200A Intelligent pump, Hitachi L-4500 photodiode array detector, Shimadzu ELSD-LT detector, and a Phenomenex Luna 5 μm C18 (2) 100 Å HPLC column (4.6 mm × 250 mm) with gradient elution using H2O (containing 40 mM NH4OAc)–MeOH from 60:40 to 0:100 (v/v) over a period of 30 min and UV detection at 230 nm. HPLC peak area method was used to calculate the concentration of withanolide in each of the sampled aliquots.44
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10

Kinetic Analysis of LepI Enzyme Inhibition

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To 50 μL solution containing 300 nM LepI in phosphate buffer (20 mM Na2HPO4, 50 mM NaCl, pH 8.0) was added diffferent concentration of SAH (0–500 μM) or 250 μM SAH with different concentration of SAM (0–100 μM) and incubated at r.t. for 10 min. Then 100 μM 6 was added to the reaction mixture to initiate the enzymatic reaction. After 5 min at 30 °C, reactions were quenched by the addition of 50 μL of acetonitrile. Protein was precipitated and removed by centrifugation and the supernatant analyzed by HPLC using a C18 column (Phenomenex Luna C18 (2) 5 μm, 2.0 × 100 mm) with isoclatic conditions (45% of H2O in CH3CN). Results were quantified by the standard curve of product 2. Final results were calculated as percent of controls. The error bars represent standard deviation (s.d.) of three independent replicates. Data fitting was performed using GraphPad Prism 6. The results are shown in Extended Data Fig. 8.
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