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6 protocols using p cdc25c ser 216

1

Comprehensive Antibody Panel for DNA Damage Signaling

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For western blotting, antibodies to the following were purchased from Cell Signaling Technology: p-CHK1 ser 317, p-CHK1 ser 345, CHK1, pCHK2 thr 68, p-H2AX ser 139 (also used for immunofluorescence and immunohistochemistry), p-CDC25c ser 216, CDC25c, p-ATM ser 1981, ATM. C-MYC antibody was purchased from Abcam. For immunohistochemical studies, antibodies were obtained from Novus biologicals (CHK1, pCHK1ser 345, pCDC25 ser 216), Cell Signaling (Danvers, MA) (pCHK2 thr 68, p-H2AX ser 319), Epitomics (Burlingame, CA) (CHK2, CDC25, c-MYC), Menarini (Florence, Italy) (P53).
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2

Western Blot Analysis of Cell Signaling

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Western blot analysis was performed using standard procedures for whole-cell extracts from cell lines. Antibodies used include Chk2 (1:5000, Becton Dickinson and Millipore), SIRT1 (1:2000, Millipore), acetyl-lysine (1:1000), phospho-CHK2-T68 (1:1000), phospho-CHK2-Thr387 (1:1000), phospho-p53-Ser20 (1:1000), acetyl-p53-Thr382 (1:1000), phospho-histone H2A.X (Ser139) (1:1000), phospho-ATM-Ser1981 (1:1000), ATM (1:1000), phospho-histone H3-S10 (1:1000), p-CDC25C (ser216) (1:1000), CDC25C (1:1000), cleaved PARP-1 (1:1000) and cleaved caspase-3 (1:1000) (Cell Signaling Technology), phospho-CHK2-Thr432 (1:500, Invitrogen), P53 (Do-1, 1:1000, Santa Cruz Biotechnology), FLAG (clone M2) (1:2000), α-tubulin (1:5000, Sigma), and β-actin (1:5000, Sigma). For immunoprecipitation analysis, cell lysates (1–4 mg) after preclearing were mixed with antibodies (2 μg) at 4 °C overnight followed by the addition of 30 μl of protein-G (for mouse antibodies)- or protein-A (for rabbit antibodies)-coupled sepharose beads (GE) for 3 h at 4 °C. Immune complexes were washed three times with lysis buffer [50 mM Tris (pH 7.4), 1% Triton X-100, 0.5% Nonidet P-40, 150 mM NaCl, protease, phosphatase inhibitor mixture (Sigma)]. After boiling in 2× loading buffer, samples were subjected to SDS-PAGE, and then scanned using ECL.
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Examining Oxidative Stress in Osteosarcoma

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Three OS cell lines, U2OS, MG63 and SaOS2, were chosen as our in vitro study model. They were kept in the DMEM or IMDM base media with 10% fetal bovine serum (FBS). 15d-PGJ2 was purchased from Calbiochem (San Diego, CA, USA). The following antibodies were used for immunoblotting: PKA C-α (Cell Signaling, Danvers, MA; #4782; 1:1000); PLK1 (Cell Signaling #4513; 1:1000); AKT (Cell Signaling #9272; 1:2000); p-AKT (Cell Signaling #9271; 1:1000); Cdc25c(5H9) (Cell Signaling #4688; 1:1000); P-cdc25c (Ser216) (Cell Signaling #4901; 1:1000); PARP (Cell Signaling #9542; 1:1000), and actin (Abs 24-100; 1:50000). The anti-8-hydroxy-2'-deoxyguanosine (8OHdG) antibody (Santa Cruz, #sc-66036; 1:200) and anti-mouse conjugated fluorescein isothiocyanate (FITC) antibody (Jackson ImmunoResearch West Grove, PA; 1:400) were used for 8OHdG detection.
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4

Western Blot Analysis of DNA Damage Markers

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Primary antibodies CHK1, pCHK1Ser345, pCHK1Ser317, CDC25C, pCDC25CSer216, Caspase 3 (#9662/#9664 (even mix)), and β‐actin were purchased from Cell Signaling (Beverly, MA, USA). pCDK1Tyr15 (ab47594) were acquired from Abcam (Cambridge, UK). pH2A.XSer139 (#05‐636) was purchased from Millipore. Wee1 (sc‐5285), p53 (sc‐126), and Cyclin A (sc‐751) were obtained from Santa Cruz Biotechnology (Dallas, Tex, USA), whereas CIP2A was brought from Novus Biologicals (Littleton, Co, USA). Cells were harvested and then lysed in ice‐cold NP‐40 lysis buffer as previously described.24 Protein quantification was performed to ensure even loading by Bradford (Bio‐Rad Laboratories AB, Sundbyberg, Sweden) analysis. Proteins (15 μg protein/lane) were separated on Criterion TGX10% Midi Precast Gels in Tris/Glycine Buffers (Bio‐Rad, Hercules CA, USA) at 200 V for 40 minutes, and blotted on PVDF‐membrane using Bio‐Rad Transblot Turbo system according to the manufacturer's instructions. Membranes were blocked in 5% nonfat milk in TBST (20 mmol/L Tris‐Cl, 136 mmol/L NaCl [pH 7.6], 0.1% Tween 20) at room temperature for 1 hour, before they were probed with primary antibodies at 4°C overnight with gentle agitation. Secondary HRP‐conjugated antibodies were visualized using ECL‐plus reagent (GE Healthcare, Chalfont St Gils, UK) by exposure to X‐ray films.
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5

Western Blot Analysis of DNA Damage Signaling

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The cells were lysed in PierceTM RIPA Buffer (ThermoScientific, Waltham, MA, USA). The protein concentrations were established using the Pierce BCA Protein Assay Kit (Thermo Scientific, Waltham, MA, USA). Western blotting was performed using standard procedures, and the blots were developed using Clarity Western ECL Substrate (Bio-Rad Laboratories, Hercules, CA, USA). Original images of western blot added to the Supplementary Data. Primary antibodies used were as follows: ERCC4 (#13465), p-ATM (Ser1981) (#13050), p-ATR (Ser428) (#2853), p-Chk1 (Ser345) (#2341), p-Chk2 (Thr68) (#2197), p-CDC25C (Ser216) (#9528), p-H2AX (Ser139) (#3257000) (1:1000; Cell Signaling Technology, Danvers, MA, USA); NEDD9 (ab18056, 1:1000), beta-Actin (ab49900, 1:100,000) (Abcam; Cambridge, MA, USA), Vinculin (700062) (1:1000, Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA). Vinculin and beta-Actin were used as the loading controls. The quantification was performed using NIH ImageJ Imaging Software (Rayne Rasband, National Institutes of Health, USA).
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6

Protein Profiling of DNA Damage Response

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Cells were collected after treatment with olaparib, AZD1775, or both for 24 hours and 72 hours. The cells were washed with ice-cold phosphate-buffered saline (PBS) and lysed in RIPA buffer containing protease inhibitors for 30 minutes on ice. Proteins were obtained by centrifugation at 13,000 rpm for 20 minutes, and equal amounts were used for western blotting. Primary antibodies against the following proteins were purchased from Cell Signaling Technology (Beverley, MA): PARP (#9532), caspase-3 (#9662), caspase-7 (#9492), WEE1 (#4936), p-cdc2-Tyr15 (#9111), CtIP (#9201), NBS1 (#3002), p-ATM-Ser1981 (#5883), p-Chk2-Thr68 (#2661), ATR (#2790), p-CHK1-Ser345 (#2341), p-CDC25C-Ser216 (#9528), p53 (#9282), p-p53-Ser15 (#9284), p21 (#2947), and cyclin B1 (#4138). GAPDH (#sc-25778) and RAD51 (#sc-398587) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The p-CDK2-Tyr15(#ab-76146) antibody was purchased from Abcam (Cambridge, UK). Anti–γ-H2AX antibody (#05-636) was obtained from Millipore (Billerica, MA). p-ATR-Thr1989 (#GTX-128145) was purchased from GeneTex (Irvine, CA), and secondary antibodies were purchased from Thermo Fisher Scientific (Waltham, MA).
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