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5 protocols using anti b raf

1

Western Blot Assay of Signaling Pathways

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The Western blots were carried out according to the standard protocol. The following primary antibodies were used: phospho‐Akt (Thr308) rabbit mAb (13038), phospho‐Akt rabbit mAb (Ser 473) (4060), anti‐Akt (pan) rabbit mAb (4691), phospho‐P70s6k rabbit mAb (9205), P70s6k rabbit mAb (2708), phospho‐4ebp1 (#13396, monoclonal), anti‐4ebp1 (#9644), anti‐phospho‐B‐Raf (#2696, polyclonal), anti‐B‐Raf (#9433, monoclonal), anti‐phospho‐Erk (#4370, monoclonal), anti‐Erk (#4695, monoclonal) (all from Cell Signaling Technology, Beverly, MA, USA). The band density was quantified using ImageJ software (NIH, Rockville, MD, USA).
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2

Immunoblot Analysis of MAPK Pathway

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A375‐Cas9, IGR1‐Cas9, and WM983B‐Cas9 cells were transduced with lentiviral sgRNA expression vectors and cell lysates were prepared for immunoblot analysis as described previously (Christodoulou et al., 2019). Antibodies used for detection included anti‐DUSP4 (1:1,000), anti‐PPP2R2A (1:1,000), anti‐BRAF (1:1,000) (Cell Signaling Technology), and anti‐Vinculin (1:1,000, clone hVIN‐1, Sigma‐Aldrich) as a loading control. Secondary anti‐mouse and anti‐rabbit antibodies were used at 1:10,000 (Jackson ImmunoResearch Europe).
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3

Bilirubin and MAPK Pathway Inhibitors

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Bilirubin (B4126-5G) was purchased from Sigma-Aldrich (USA). Vemurafenib (S1267), KO-947 (S8569), and LY3214996 (S8534) were obtained from Selleckchem (Houston, TX). Antibodies, including anti-PARP (#9532), Caspase 3 (#9662), anti-cleaved Caspase-3 (Asp175) (#9661), anti-Caspase 9 (#9502), anti-cleaved Caspase-9 (Asp315) (#9505), anti-phospho-B-Raf (Ser445) (#2696), anti-B-Raf (#14814), anti-phospho-MEK1/2 (Ser217/221) (#3958), anti-MEK1/2 (#4694), anti-phospho-ERK1/2 (Thr202/Tyr204) (#4370), anti-ERK1/2 (#4695), anti-phospho-MNK1 (Thr197/202) (#2111), anti-MNK1 (#2195), anti-phospho-eIF4E (Ser209) (#9741), anti-eIF4E (#2067), anti-phospho-p70S6K (Thr421/Ser424) (#9204), anti-p70S6K (#2708), anti-phospho-4eBP1(Thr37/46) (#2855), anti-4eBP1 (#9644), and anti-GAPDH (#5174) were purchased from Cell Signaling Technology (Beverly, MA).
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Pancreatic Marker Antibody Validation

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Pancreatic marker Kit (Catalogue #8679; anti-α-amylase, anti-keratin, anti-PLA-2GB), anti-pERK, anti-phos-AKT, anti-BRAF, anti-Bcl2, anti-Ki67 and anti-β-actin were purchased from Cell Signaling technology (Danvers, MA) whereas anti-KRAS-GTP antibody was procured from New East Biosciences (Malvern, PA).
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5

Antibody-based protein expression analysis

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Antibodies used were anti-PLCε, anti-PPARβ (santa cruz); anti-PPARα, anti-PPARγ, anti-Twist1, anti- phosphorylated (p)-Twist1 (Ser68), anti-PGC-1α, anti- CPT1B, anti-ERRα, anti-UCP-1, anti-ACADM, anti-MEKK3, anti-MEK4, anti-MEKK2, anti-ERK1/2, anti-p-MEK (S218/S222), anti-MEK, anti-p-JNK (Thr183/Tyr185), anti-JNK (Abcam); anti-p-ERK1/2 (Thr202/Tyr204), anti-p-P38, anti-P38, anti-B-Raf, N-Cadherin, E-Cadherin, Vimentin (Cell Signaling Technology); anti-Ras, anti-H3(wanlei); β-actin(Immunoway biotechnology); Anti-DDK (FLAG) (ORIGENE). The total protein, cell cytoplasmic protein and nuclear protein extracts and western blot assays were performed with the above antibodies by standard protocols we described before [22 (link)].
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