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Total rna isolation reagent

Manufactured by Biosharp
Sourced in China

The Total RNA Isolation Reagent is a solution designed for the extraction and purification of total RNA from various biological samples, such as cells, tissues, or other sources. It utilizes a guanidinium thiocyanate-phenol-chloroform extraction method to effectively isolate high-quality RNA. The reagent is suitable for a wide range of applications, including gene expression analysis, RT-PCR, and other molecular biology techniques.

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18 protocols using total rna isolation reagent

1

Quantitative RNA Expression Analysis

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Total RNA was extracted from the Total RNA Isolation Reagent (Biosharp, Cat# BS259A). Reverse transcription was performed with FastKing kit cDNA (Tiangen, Cat# KR118-02). Quantitative PCR was performed with Powerup SYBR Master Mix (Applied Biosystems, Cat# A2577) using a Roche Light Cycle96 machine. All these procedures were performed according to the manufacturer’s protocols. Gapdh was used as a normalized control. All RT-qPCR primer sequences were provided in the Table S1.
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2

Quantitative Real-Time PCR Analysis

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We performed qRT-PCR analysis as previously described [48 (link),49 (link),50 (link)]. Briefly, total RNA was extracted by Total RNA Isolation Reagent (BS258A, Biosharp, Shanghai, China) and reverse transcribed into complementary DNA (cDNA) by the First-strand cDNA Synthesis Kit (K1072, Apexbio, Huston, TX, USA). Expression of genes was quantified by the SYBR Green PCR Mix (BL697A, Biosharp, Shanghai, China) on the LightCycler 480 (Roche, Basel, Switzerland) instrument. The primer sequences can be found in Table S4.
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3

Total RNA Extraction and Quantitative PCR

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Total RNA from plant leaves was extracted using the TriZol method with Total RNA Isolation Reagent (BS258A, Biosharp). Then, it was reverse transcribed into cDNA using Hifair® III 1st Strand cDNA Synthesis SuperMix with gDNA digester plus (11141ES60, YASEN), and the cDNA was used as a template for PCR amplification. Real-time PCRs were performed in a Bio-Rad CFX96 Real-Time System (C1000 Touch™, USA) with 2 × SYBR qPCR Mix (PC3302, Aidlab). The relative gene expression was normalized to the expression of ubiquitin5 (UBQ5). The primers used in this study are listed in Additional file 1: Table S1. The mean threshold cycle values for the genes tested in the study were calculated based on three replicates.
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4

Quantifying HER2 and miR-18a-5p Expression

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Total RNA was isolated using a total RNA Isolation Reagent (Biosharp, China). mRNA was transcribed with a Toyobo reverse transcription kit acquired from Toyobo (Japan) and the miRNA was reverse transcribed using the One Step PrimeScript miRNA cDNA Synthesis Kit acquired from Dalian Bao Biological Engineering (China). Real time qPCR was performed using SYBR Green qPCR Master Mix (MedChemExpress, USA). Amplification was performed at 95°C for 10 min, followed by 40 cycles at 95°C for 10 s and 62°C for 40 s. The relative expression levels of HER2 and miR−18a−5p were assessed using the 2−ΔΔCt technique, with internal controls being GAPDH and U638 (link). The primer sequences used are listed in Table 1.

The sequences of the primers in this study.

PrimerSequences
miR−18a−5pForward: 5′-GATAGCAGCACAGAAATATTGGC−3′
Reverse: 5′-GTGCAGGGTCCGAGGT−3′
HER2Forward: 5′-CTGTTTTGGACCGGCTGACC−3′
Reverse: 5′-CAGGAGTGGGTGCAGTTGAT−3′
GAPDHForward: 5′-AGGGCTGCTTTTAACTCTGGT−3′
Reverse: 5′-CCCCACTT-CATTTTGGAGGGA−3′
U6Forward: 5′-GCTTCGGCAGCACATATACTAAAAT−3′
Reverse: 5′-CGCTTCACGAATTTGCGTGTCAT−3′
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5

RNA Extraction and RT-qPCR Protocol

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Total RNA was extracted using Total RNA Isolation Reagent (Biosharp, Cat #BS259A). Reverse transcription was performed using the FastKing RT Kit (Tiangen, Cat #KR118-02). Quantitative PCR was performed using the Powerup SYBR Master Mix (Applied Biosystems, Cat #A25778). These experiments were conducted according to the corresponding manufacturer’s manuals. Gapdh was used as a normalized control gene. The primer sequences used in real-time quantitative PCR (RT-qPCR) are listed in Supplementary Table 1.
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6

Quantifying Heart-Related Gene Expression

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Using the Total RNA Isolation Reagent (BS259A, Biosharp, China), total RNA was extracted from heart tissues or cells. After that, the total RNA underwent reverse transcription and quantification on a Real-Time PCR system (7500, ThermoFisher, USA) using the One-Step SYBR Green qRT-PCR Kit (BL643B, Biosharp, China). Under the adoption of the 2ΔΔCT method, B-type natriuretic peptide (BNP), atrial natriuretic peptide (ANP), major histocompatibility complex-B (B-MHC), GSK3A, CD36, PDK4 (Pyruvate dehydrogenase kinase 4), and Cpt1b (carnitine palmitoyltransferase 1B) expressions were normalized to glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [12 (link)]. Supplementary Table 3 lists the primer sequences.
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7

Total RNA Isolation and qRT-PCR Analysis

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Total RNA was isolated using Total RNA Isolation Reagent (Biosharp Life sciences, Beijing, China) according to the manufacturer’s instructions. Reverse transcription was performed using Hifair II 1st Strand cDNA Synthesis SuperMix with a gDNA digester (Yeasen, HB181210, Shanghai, China). Quantitative real-time PCR was performed using SYBR Green Master Mix (Yeasen, HB181203, Shanghai, China) on a Lightcycler Real-Time PCR System (Roche, Beijing, China). The relative expression level of the target genes and the relative fold change were normalized to GAPDH and the control, respectively. The sequences of primers (Tianyihuiyuan, Guangzhou, China) are shown in Table S2.
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8

Quantitative Real-Time PCR Analysis of Gene Expression

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Total RNA was extracted using Total RNA Isolation Reagent (Biosharp, China) and then reverse transcribed into cDNA using PrimeScript™ RT Reagent Kit (Takara, China). The qPCR was performed using TB Green® Premix Ex Taq™ II (Takara, China) on the 7,500 Fast Real-Time PCR System (Applied Biosystems, CA, USA). The 2−ΔCt method was used to calculate gene transcription level, with β-actin mRNA as control. The primer sequences are listed in Table 1.
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9

Comprehensive RNA Quantification Methods

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Total RNA samples were extracted using Total RNA Isolation Reagent (Biosharp, Hefei, China). For protein-coding gene expression quantification, reverse transcriptions were performed using FastKing RT Kit (Tiangen, Beijing, China) and Quantitative PCRs were performed using Powerup SYBR Master Mix (Applied Biosystems, CA, USA). GAPDH served as a normalized control. As to microRNA, cDNA samples were produced sequentially by adding poly(A) tail with E.coli Poly(A) Polymerase (New England Biolabs, MA, USA) and doing reverse transcription with SuperScript™ III Reverse Transcriptase (Invitrogen) and a universal reverse transcription primer (5′-CAGGTCCAGTTTTTTTTTTTTTTTVN-3′; “V” stands for A, C, or G, and “N” stands for A, T, C, or G.) as described previously43 (link)–45 (link). Quantitative PCRs for microRNA were performed utilizing Powerup SYBR Master Mix (Applied Biosystems). microRNAs′ expression was relative to U6. All quantitative PCR primer sequences are provided in the supplement (Table S1).
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10

Comparative Gene Expression Analysis

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Total RNA from the sample cells was extracted using total RNA isolation reagent (Biosharp) and then reverse-transcribed into cDNA using the Hifair® II 1st Strand cDNA Synthesis Kit (YEASEN, Shanghai). Subsequently, qPCR analysis was performed using Hieff® qPCR SYBR Green Master Mix (YEASEN). The following conditions were applied: an initial denaturation step at 95 °C for 5 min, followed by 40 cycles at 95 °C for 10 s and 60 °C for 30 s. The comparative Ct method was utilized to assess relative gene expressions, with normalization against β-actin (as indicated in Table S2).
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