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Matlab release 2012b

Manufactured by MathWorks
Sourced in United States

MATLAB Release 2012b is a software application for numerical computation and visualization. It provides a high-level programming language and a development environment for various technical computing tasks, including data analysis, algorithm development, and visualization.

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7 protocols using matlab release 2012b

1

Assessment of Histamine-induced Itch via Iontophoresis

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Self-reported itch in response to histamine iontophoresis was assessed using the same 0–10 NRS as described under Expected Itch. During iontophoresis, participants continuously rated itch using a vertical bar slide depicting the NRS. Scores were sampled at a 10-Hz rate using E-Prime 2.0 (42 ). Directly following iontophoresis, mean itch was verbally assessed by asking participants how much itch (on a 0–10 scale) they experienced in general during the test. From 1 to 4 min after iontophoresis, participants were asked to rate self-reported itch every 30 s on the bar slide as a follow-up period. The primary study outcome was the area under the curve (AUC) of itch during the 2.5 min of iontophoresis. Secondary outcomes were maximum itch reported during the 2.5 min of iontophoresis, verbally assessed mean itch, and AUC itch during the 4-min follow-up. AUC of itch and maximum itch during iontophoresis were computed using MATLAB Release 2012b (The MathWorks, Inc., Natick, MA, USA).
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2

Analyzing Ordinal Anatomical Relationships

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While type difference and border distance are inherently ordinal measures, projection directions can also be considered as ordinal values, by arranging them in the order of (‘ascending’, ‘lateral’, ‘descending’). To assess relations between these ordinal variables, we computed Spearman’s rank-correlation coefficient ρ. We also computed Spearman’s ρ to assess relations between relative projection frequencies and the respective anatomical variables.
To test two groups of ordinal measures for equality of their medians, we computed Wilcoxon rank sum test statistics (W). To test for equality of more than two groups of ordinal measures, we computed Kruskal–Wallis test statistics (H). We calculated Jonckheere–Terpstra test statistics (JT) to assess trends across multiple groups of ordinal measures. JT was computed using IBM SPSS Statistics Version 19 (IBM Corporation, Armonk, NY, USA). All tests were pre-assigned a two-tailed significance level α = 0.05. If not indicated otherwise, all analyses were performed using MATLAB Release 2012B (The MathWorks, Inc., Natick, MA, USA).
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3

Quantitative MRI for Vein Segmentation and Oxygen Mapping

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All data processing, except the QSM (which was obtained by the free tool described in [34 (link)]), was performed using an in-house developed library for Matlab (MATLAB® Release 2012b, The MathWorks, Inc., Natick, MA, USA), partly described in previous works [16 (link), 35 –37 (link)], on a commercial workstation (Intel® Core i7-3820 CPU @ 3.6 GHz; RAM 16 GB) equipped with 2 GPU boards (NVIDIA GeForce® GTX 690). The demonstrative application of qMRI for vein segmentation, and Oxygen Extraction Fraction (OEF) and MTVF mapping was respectively provided by the MAVEN algorithm [20 ] and the in-house implementations of the methods described in [27 (link), 38 (link)].
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4

Cardiac Response to Robot Approach

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Electrodes were attached at the top centre of the chest (10 cm below the suprasternal notch), the bottom left and to the right of the ribs (10 cm above the bottom of the rib cage). Heart rate was recorded continuously during baseline and the robot approach with AcqKnowledge (Version 4.3.1. BIOPAC Systems Inc.). Recordings were acquired through an electrocardiogram (ECG) amplifier (ECG100C) and a BIOPAC data acquisition system (MP150 Windows) with a sampling rate of 200 Hz. In AcqKnowledge, a 0.5-Hz high-pass filter and a 50-Hz notch filter were applied to stabilize the ECG signal. Recorded physiological data was further processed by inspecting the detected R peaks and valid interbeat intervals (IBI) in MATLAB Release 2012b (The MathWorks, Inc., Natick, MA, USA). Motion artefacts were visually identified and excluded from the data. Heart rate data were summarized in 30-s epochs, in concordance with the behavioural data.
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5

Neuronal Response Analysis via PSTHs

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PSTHs were constructed by aligning spike rasters to the onset of visual feedback and averaging firing rates across multiple trials. Firing rates were calculated in 10-msec bins. For display, example cell PSTHs were smoothed using a Gaussian kernel (σ = 50 msec). Figures depicting the average proportion of cells demonstrating a significant effect and the average effect size (partial η2 and Hedge’s g) across time within the trial were constructed by calculating each measure for each cell, using a 500-msec sliding window, slid in 10-msec steps. We then averaged across neurons to obtain an average measure for the populations of VS and DS cells.
For all population analyses reported, we made us of all cells that had enough trials, rather than a subpopulation of significantly modulated cells. All statistical analyses were carried out by using GraphPad Prism version 6 (GraphPad Software) and MATLAB release 2012b (The MathWorks, Natick, MA).
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6

Quantitative Brain MRI in Neurological Disorders

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All data processing was performed using an in-house developed library for Matlab (MATLAB® Release 2012b, The MathWorks, Inc., Natick, MA, USA), partly described in previous works [16 –18 ], on a commercial workstation (Intel® Core i7-3820 CPU @ 3.6 GHz; RAM 16 GB) equipped with 2 GPU boards (NVIDIA GeForce® GTX 690).
The definition of the brain structures was qualitatively assessed in consensus by three experienced neuroradiologists, who were asked to indicate the specific diagnostic contribution provided by each map.
To further assess the capability of the quantitative parameters to distinguish between different intracranial structures, a set of bilateral ROIs (see Fig 2) was manually drawn on the R1-maps (and then automatically transferred to the other maps) of both the HC and MS subjects. ROIs were intentionally drawn well within the anatomical structures to avoid partial volume effects.
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7

Continuous ECG Recording During Locked Box Task

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During the locked box task data were recorded continuously with AcqKnowledge (Version 4.3.1. BIOPAC Systems Inc.). Electrodes were attached, at the top center of the chest, (10 cm below the suprasternal notch) the bottom left, and right of the ribs (10 cm above the bottom of the rib cage). Recordings were acquired through an Electrocardiogram amplifier (ECG100C) and a BIOPAC data acquisition system (MP150 Windows) with a sampling rate of 200 Hz. In AcqKnowledge a 0.5 Hz highpass filter and a 50 Hz notch filter were applied to stabilize the ECG signal. Recorded physiological data was further processed by inspecting the detected R peaks and valid interbeat intervals (IBI) in MATLAB Release 2012b (The MathWorks, Inc., Natick, Massachusetts, United States). Motion artifacts were visually identified and excluded from the data. Heart rate data were summarized in 30-s epochs, in concordance with the behavioral data.
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