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5 protocols using mouse anti human hif 1α

1

Western Blot Analysis of HIF1α and PD-L1 Expression

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Cells were harvested and lysed as described before [20 (link)]. The protein concentration was determined using the Bradford assay (#39222, Serva, Heidelberg, Germany), and equal amounts were loaded on a gel. Protein levels were analyzed by Western blot as described before [21 (link)]. The following primary antibodies were used: mouse anti-human HIF1α (BD Biosciences, #610959), mouse anti-human PD-L1 (Cell Signaling Technology, #29122), mouse monoclonal β-Actin Antibody (C4) (#sc-47778). The following secondary antibodies were used: Donkey-anti-mouse IRDye 800CW (Li-cor Biosciences, Lincoln, NE.) and Donkey-anti-Rabbit IRDye 680CW (Li-cor Biosciences). All antibodies were diluted in 3% non-fat milk in TBST. Immunoblots were analyzed by Odyssey infrared imaging system (Li-cor Biosciences).
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2

Detecting HIF-1α Expression in Leukemia Cells

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HL-60 and KG-1 cells (10 × 106 cells) were incubated with the indicated compounds for 24 h. Cells were harvested and lysed in RIPA buffer. The protein extract was subjected to SDS-polyacrylamide gel (BioRad) electrophoresis and transferred to a nitrocellulose membrane (BioRad). Mouse anti-human HIF-1α and goat anti-β-actin antibodies were purchased from BD and Abcam respectively.
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3

Quantifying HIF-1α Stabilization in AT-MSCs

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AT-MSCs were plated in black 96-well clear-bottom plates (# 6005182, Perkin-Elmer) at a cell-density of 1 × 104 cells/well and allowed to adhere overnight. Cells were cultured for 5 and 72 h in MM with 312.5, 625, and 1563 µM of DMOG, or 16, 32, 162, and 624 µM of baicalein, or with equal volumes of DMSO. The HIF-1α stabilization was quantified using the In-Cell ELISA Near Infrared Detection Kit (# 62201, Thermo Fisher Scientific) following the manufacturer’s instructions. Cells were fixed in 4% methanol-free formaldehyde (# 28906, Thermo Scientific), followed by washing, permeabilization, and blocking steps. HIF-1α was probed using mouse anti-human HIF-1α (1:50, # 610959, BD Biosciences), and an antibody for housekeeping protein rabbit polyclonal beta actin (2 µg/mL, # PA5-16914, Thermo Fisher Scientific). After overnight incubation at + 4 °C, AT-MSCs were washed with 1 × wash buffer before incubation with species-specific near-infrared DyLight-conjugated secondary antibody mix for 1 h at RT. After washing steps, Odyssey FC Imager (LI-COR) served to scan the plates with excitation/emission maxima of 692/712 nm for DyLight 680 Dye and 777/794 nm for DyLight 800 Dye. Measured signals were analyzed with Image Studio Software (LI-COR).
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4

Protocol for Cell Extract Preparation and Western Blot Analysis

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Cell extract was prepared in a lysis buffer [11 (link)] which contains 20 mM HEPES, pH 7.9, 0.42 M NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 25% glycerol freshly supplemented with 0.5 mM DTT and protease inhibitor cocktail (Roche, Mannheim, Germany). Protein concentrations were determined by using Pierce BCA protein assay kit (Pierce, Rockford, IL, USA). Antibodies used for Western blotting were mouse anti-human HIF-1α (#610959, BD Bioscience, San Jose, CA, USA), rabbit anti-V5 antibody, and anti-β-tubulin (#V8137 and #T0198, Sigma-Aldrich, St. Louis, MO, USA). Signals were developed using Super Signal West Pico chemiluminescent substrate (Cat#34018, Thermo Scientific, Rockford, IL, USA).
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5

Colorectal Tumor Tissue Analysis

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All colorectal tumor tissues were obtained as part of surgical resection with both tumor and normal tissue (from uninvolved mucosa ≥100 mm from the tumor edge) collected. Tissue samples were flash-frozen in liquid N2 within an hour of collection and stored at −80°C. Frozen samples were ground to a fine powder in liquid nitrogen, the collected tissue weighed, and 10 mM phosphate buffer (pH 7.4) added to make a homogenous suspension that was used to measure DNA (cellularity), tissue ascorbate content, and HIF-1α protein and gene product expression (26 (link)).
Hypoxia-inducible factor-1α was detected with mouse anti-human HIF-1α (1:1,000) (BD Biosciences, San Jose, CA, USA); BNIP3 with goat anti-human BNIP3 (1:1,000) (R&D Systems, Minneapolis, MN, USA); and GLUT-1 with rabbit anti-human GLUT-1 (1:3,000) (Abcam, New Zealand). Anti-β-actin primary antibody (1:10,000), horseradish peroxidase (HRP)-conjugated goat anti-mouse (1:2,500), rabbit anti-goat (1:20,000), and goat anti-rabbit (1:20,0000) were from Sigma Aldrich, St Louis, MO, USA. Protein detection was with ECL™ Plus detection reagent (GE Healthcare/Amersham Biosciences, Buckinghamshire, UK). Human VEGF protein was measured using a DuoSet ELISA from R&D Systems. Complete Mini protease inhibitor cocktail was from Roche Diagnostics (Mannheim, Germany).
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