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Mouse anti smn

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Mouse anti-SMN is a laboratory reagent used to detect the presence of Survival of Motor Neuron (SMN) protein in biological samples. SMN is a critical protein involved in the biogenesis of small nuclear ribonucleoproteins, which play a vital role in RNA processing. This antibody can be used to identify and quantify SMN expression levels in various research and diagnostic applications.

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14 protocols using mouse anti smn

1

Immunofluorescence Staining of Fibroblasts

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Fibroblast cultures were fixed in 4% paraformaldehyde for 20 minutes and then incubated with 3% of triton (10 min) and 5% BSA (45 min) solutions. Primary antibody mouse anti-SMN (BD Transduction Laboratories) at 1 : 100 was incubated O/N at 4°C and secondary antibody Alexa Fluor 546 goat anti-mouse together with Alexa Fluor 488-conjugated phalloidin (both at 1 : 200; Invitrogen) was incubated for 1 h at room temperature. Images were taken with a confocal microscopy, Radiance 2100 microscope (Biorad Laboratories, Hercules, CA).
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2

Western Blot Protein Detection Protocol

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Protein lysates were prepared using radioimmunoprecipitation assay (RIPA) buffer and brief sonication. A total of 30 μg of homogenized protein samples was subjected to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride (PVDF) membrane in iBlot™ gel transfer stack using the iBlot dry blotting system (Invitrogen), as described previously [33 (link)].
Membranes were blocked with 5% nonfat dry milk and incubated overnight with primary antibodies. Mouse anti-β-actin (1:5000; Sigma-Aldrich, St. Louis, MO, USA) and mouse anti-SMN (1:5000; BD Transduction Laboratories, Franklin Lakes, NJ, USA) primary antibodies were used to detect β-actin and SMN1 proteins, respectively. β-actin was used as an endogenous reference protein and as the relative denominator for Western blotting. Anti-mouse IgG (Cell Signaling #7076 Anti-mouse IgG, HRP-linked) was used as a secondary antibody.
Chemiluminescent signals produced using Immobilon™ Western chemiluminescent HRP substrate (Millipore Corporation, Billerica, MA, USA) were detected using the Bio-Rad ChemiDoc Touch MP imaging system (Bio-Rad Laboratories Inc., Hercules, CA, USA). The signal intensity of the membrane was determined using ImageJ ver. 2.0. Western blotting experiments and signal-intensity analyses were performed in triplicate.
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3

Immunohistochemical Analysis of Cellular Markers

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The primary antibodies used and the dilutions were as follows: guinea pig anti-insulin (1:50; Dako), mouse anti-glucagon (1:200; Abcam), mouse anti-actin (1:800; Fitzgerald), mouse anti-Smn (1:5000; BD Transduction Laboratories), rabbit anti-phospho-AKT (Ser473) (1:500; Cell Signaling), rabbit anti-AKT (1:500; Cell Signaling), rabbit anti-phospho-CREB (Ser133) (1:500; Cell Signaling), rabbit anti-CREB (1:500; Cell Signaling), rabbit anti-Pck1 (1:1000; Abcam), rabbit anti-CARM1 (1:5000; Bethyl Laboratories) mouse anti-2H3 (neurofilament 165 kDa, 1:100; Hybridoma Bank) and mouse anti-SV2 (1:250; Hybridoma Bank). The secondary antibodies used were as follows: donkey anti-guinea pig biotin-SP-conjugated (1:200; Jackson Immuno Research), streptavidin-Cy3-conjugated (1:600; Jackson Immuno Research), Alexa Fluor 488 goat anti-mouse (1:500; Molecular Probes), HRP-conjugated goat anti-rabbit IgG (1:5000; Bio-Rad) and HRP-conjugated goat anti-mouse IgG (1:5000; Bio-Rad).
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4

Western Blot Analysis of SMN Protein

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The cells were lysed with RIPA lysis buffer containing 1× phenylmethanesulfonyl fluoride (PMSF, 1 mM) and 1% protease-inhibitor cocktail on ice for 5 min. The lysates were collected, sonicated, heated at 95 °C for 10 min, and measured with a BCA protein assay (Thermo Fisher Scientific, Waltham, MA, USA). Protein samples (15 μg) from each group were subjected to 10% polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. After being blocked with 5% nonfat milk in PBST (0.1% Tris-buffered saline with Tween-20), the membranes were incubated with mouse anti-SMN (BD Transduction Laboratories, Franklin Lakes, NJ, USA) and mouse anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA) at 4 °C overnight. Then, they were washed with PBST, incubated with anti-mouse horseradish peroxidase-conjugated secondary antibodies (Abcam, Cambridge, UK) at 20–25 °C for 1 h, and visualized via enhanced chemiluminescence by using an ECL detection kit (Thermo Fisher Scientific, Waltham, MA, USA). The details of the antibodies are presented in Table S5.
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5

Quantifying Mesenchymal Stem Cell Proteins

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Umbilical cord-derived mesenchymal stem cells and FBs were lysed with RIPA buffer [50 mM Tris/HCl (pH 7.5) containing 1.0% NP-40, 1.0% sodium deoxycholate, 0.1% SDS, 150 mM NaCl, and 1 mM EDTA]. Cell lysates were separated by SDS-PAGE, and proteins were transferred to polyvinylidene difluoride membranes (Millipore). Membranes were blocked with Block Ace (Dainippon Pharmaceutical), incubated with mouse anti-SMN (1:1,000; BD Transduction Laboratories, Franklin Lakes, NJ, USA) or mouse anti-beta-actin (Abcam, Cambridge, MA, USA; 1:1,000), incubated with horseradish peroxidase (HRP)-coupled anti mouse IgG (1:100,000; Jackson ImmunoResearch Laboratories, West Grove, PA, USA), and developed by Immobilon Western Chemiluminescent HRP Substrate (Millipore). Chemiluminescent signals were captured by Amersham Imager 600 (GE Healthcare Biosciences, Pittsburgh, PA, USA) according to the manufacturer’s instructions. Relative SMN expression was calculated based on the beta-actin expression.
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6

Spinal Cord SMN Protein Analysis in SMA Mice

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The ventral horns from L1–L3 spinal cords WT and SMA mice (n=2) at P4 was removed under the microscope. Protein was homogenized in lysis buffer (150 mM NaCl, 1% Triton, 2 mM EDTA, 50 mM Tris, pH7.4). 20 μg protein extract was electrophoresed on a 12% SDS-PAGE gel and blotted for 40 mins to a PVDF membrane. The membranes were blocked for 1 hour with 5% skim milk and then probed with mouse anti-SMN (1:10,000, B&D), mouse anti-Tubulin (1:50 000, clone DM1A, Sigma) and mouse anti-Kv2.1 (1:5, NeuroMab) in blocking buffer overnight at 4°C. Subsequently, the membranes were washed 3 times with PBS and incubated with appropriate HRP-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories) in PBS-T for 1 hour at room temperature. After 3 sequential 10 mins washes, enhanced chemiluminescence (GE Healthcare, Lifesciences) was used to for visualization.
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7

Spinal Cord SMN Protein Analysis in SMA Mice

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The ventral horns from L1–L3 spinal cords WT and SMA mice (n=2) at P4 was removed under the microscope. Protein was homogenized in lysis buffer (150 mM NaCl, 1% Triton, 2 mM EDTA, 50 mM Tris, pH7.4). 20 μg protein extract was electrophoresed on a 12% SDS-PAGE gel and blotted for 40 mins to a PVDF membrane. The membranes were blocked for 1 hour with 5% skim milk and then probed with mouse anti-SMN (1:10,000, B&D), mouse anti-Tubulin (1:50 000, clone DM1A, Sigma) and mouse anti-Kv2.1 (1:5, NeuroMab) in blocking buffer overnight at 4°C. Subsequently, the membranes were washed 3 times with PBS and incubated with appropriate HRP-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories) in PBS-T for 1 hour at room temperature. After 3 sequential 10 mins washes, enhanced chemiluminescence (GE Healthcare, Lifesciences) was used to for visualization.
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8

Western Blot Analysis of Protein Targets

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Western blot analysis was performed as previously described (Paronetto et al., 2007 (link)). The primary antibodies (1:1,000) were rabbit anti-SAM68, mouse anti-ACTIN, mouse anti-GAPDH (all from Santa Cruz Biotechnology, Inc.), mouse anti-U2AF65 (Sigma-Aldrich), and mouse anti-SMN (BD).
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9

Co-IP and Western Blotting Assay

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Co-IP and western blotting were performed as previously described [19 (link)] with minor modifications (Supplementary Materials and Methods). In Fig. 6A, B, D–G, M, N, the intensity of each lane was measured by ImageJ software (https://imagej.nih.gov/ij/). Following antibodies were used for Co-IP: rabbit anti-Ddx20 antibody (10 µg, homemade, Immunogen is 722-740 aa of mouse Ddx20), mouse anti-FLAG M2 (1:1,000, mouse, Sigma, F1804), normal rabbit IgG (10 µg, MBL, Cat#PM035). Following antibodies were used for western blotting: rabbit anti-HA (1:1,000, MBL, Cat#561), mouse anti-FLAG M2 (1:1,000, mouse, Sigma, F1804), mouse anti-Myc (1:1000, DSHB, 9E10), rabbit anti-Ddx20 antibody (1:1,000, homemade), mouse anti-Olig2 antibody (1:1,000, Millipore, Cat#MABN50), mouse anti-SMN (1:1000, BD Biosciences, Cat#610646), mouse anti-Gemin2 (1:1000, BioLegend, Cat#862902), mouse anti-Gemin6 (1:1000, BioLegend, #862302), mouse anti-β-actin (1:2,000, Sigma-Aldrich, Cat#AC-15), mouse anti-α-Tubulin (1:2000, Cell Signaling Technology, Cat#3873), horseradish peroxidase (HRP)-labeled anti-rabbit IgG, HRP-labeled anti-mouse IgG (1:2,000, Cell Signaling Technology, Cat#7074, 7076).
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10

Quantifying SMN Levels in FUS-Expressing Neurons

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Cultured rat cortical neurons were transfected on DIV10 with appropriate plasmid constructs (mCherry tagged FUS-WT, FUS-R521C, FUS-R518K and GFP tagged scramble shRNA or MBNL1 shRNA). After 48 h of transfection, cells were processed for immunocytochemistry to probe for SMN using mouse anti-SMN (BD Biosciences, Cat# 610647) at 1:150 dilution. Axons were labeled using chicken anti-Neurofilament-M (Novus Biologicals, Cat#NB300-222) at 1:300 dilution. Primary antibodies were incubated at 4 degree overnight. Alexa fluor tagged fluorescent secondary antibodies were used at 1:500 dilutions. Z-stack confocal images were acquired using a × 60 oil immersion objective of a confocal microscope (Olympus). Laser and detector settings were kept constant for all conditions. Maximum intensity projected images were constructed using FIJI. Regions of interest were marked using neurofilament positive immunoreactivity for analysis. Data were analyzed from three independent experiments and 6–9 neurons were analyzed per conditions. SMN immunofluorescence was measured on a scale of 0-4096 pixels.
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