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20 protocols using ab183781

1

Antibody Characterization for Iron Metabolism

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The following antibodies were used: β-actin antibody (cw0096m, CWbio, China), FPN1 antibody (MTP11-S, ADI, USA), DMT1 (+IRE) antibody (NRAMP21-S, ADI, USA), 4-HNE antibody (HNE-11S, ADI, USA), TfR1 antibody (ab84036, Abcam, USA), L-ferritin antibody (ab109373, Abcam, USA), H-ferritin antibody (ab183781, Abcam, USA), hepcidin antibody (ab30760, Abcam, USA), Aβ22–35 antibody (A3356, Sigma, USA), phospho-p38 (p-p38) antibody (4511S, CST, USA), p38 antibody (8690S, CST, USA), phospho-ERK (p-ERK) antibody (9102S, CST, USA), ERK antibody (4372S, CST, USA), Bcl-2 antibody (12789-1-AP, Proteintech, China), Bax antibody (50599-2-Ig, Proteintech, China), GFAP antibody (MAB360, Millipore, USA), Iba1 antibody (MABN92, Millipore, USA), NeuN (ab104224, Abcam, USA), CD31 (77699T, CST, USA), PSD-95 (ab18258, Abcam, USA), anti-rabbit IgG (RPN4301, Amersham, UK), anti-mouse IgG (RPN4201, Amersham, UK), DyLight 488 goat anti-mouse IgG (A23210, Abbkine, USA), DyLight 549 goat anti-rabbit IgG (A23320, Abbkine, USA), and DyLight 549 goat anti-mouse IgG (A23310, Abbkine, USA).
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2

Protein Expression Quantification via Western Blot

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Protein samples were collected from tissues or cells with RIPA Lysis Buffer (50 mM Tris pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS). Protein was loaded onto SDS-PAGE gel electrophoresis system (PowerPac, Bio-Rad, 164-5052). PVDF membranes were first used for transfer prior to membrane blocking with 5–8% skimmed milk for 1 h. They were then incubated with primary antibodies for 8–12 h (4°C), and were finally incubated with secondary HRP-conjugated antibodies (anti-mouse, Proteintech #SA00001-1, 1/10,000; anti-rabbit, Proteintech #SA00001-2, 1/10,000). WB densitometry was quantified using the Image Lab system. Antibodies used included anti-Adipsin rabbit monoclonal antibody (Abcam, ab213177, 1/1,000), anti-transferrin rabbit monoclonal antibody (Abcam, ab109503, 1/8,000), HRP anti-beta actin mouse monoclonal antibody (Abcam, ab20272, 1/5,000), anti-TFRC rabbit polyclonal antibody (Proteintech, 10084-2-AP, 1/2,000), anti-ferritin heavy chain rabbit monoclonal antibody (Abcam, ab183781, 1/1,000), anti-COX2 rabbit polyclonal antibody (ABclonal, A1253, 1/3,000), anti-GPX4 rabbit monoclonal antibody (ABclonal, A11243, 1/1,000), anti-GAPDH rabbit polyclonal antibody (Proteintech, 10494-1-AP, 1/8,000).
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3

Histological Analysis of Nrf2, FTH1, and GPX4

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Once sacrificed, rats underwent decapitation, the cerebrum was extracted and tissue from peri-haemorrhagic areas was harvested from the various cohorts. Following embedding in paraffin, the specimens were sliced into 5-µm sections; xylene was utilised for dewaxing. The sections were then soaked in antigen repair solution and a low flame was applied for 10 min. After cooling to the ambient temperature, the samples underwent incubation in 3% hydrogen peroxide; goat serum was used for blocking. Threefold 5-min washing in phosphate-buffered saline was performed at each stage of the process.
The sections then underwent overnight incubation at a temperature of 4 °C with primary antibodies, i.e. rabbit anti-Nrf2 (1:200, no. bs-1074R, Bioss), rabbit anti-FTH1 (1:400, no. ab183781, Abcam) and rabbit anti-GPX4 (1:300, no. ab125066, Abcam). Incubation for 30 min at 37 °C with the equivalent secondary antibody, i.e. biotinylated goat anti-rabbit IgG (1:200, no. A0277, Beyotime) was performed. Lastly, labelling with horseradish, produced in DAB, was undertaken. The samples were soaked in distilled water and then haematoxylin counterstaining was conducted, followed by desiccation and sealing of the sections. A microscope (DP73, Olympus Corporation, Tokyo, Japan) was employed to acquire images at × 400 magnification.
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4

Hippocampal Protein Expression Analysis

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Dissected hippocampal tissues were homogenized in RIPA buffer (1% NP‐40, 0.1% SDS, 0.5% PMSF, and 4% Roche protease inhibitor) by sonication. After centrifugating at 12,000g for 20 min at 4°C, the supernatant was collected and protein concentration was measured. A total cell extract containing ~30 μg of protein was subjected to SDS‐PAGE and then transferred onto NC membrane. The membrane was blocked by incubation with 5% skim milk for 90 min and then hybridized overnight with primary antibodies at 4°C. The primary antibodies used include anti‐ferritin light chain (ab109373, Abcam), anti‐ferritin heavy chain (ab183781, Abcam), anti‐TfR1 (13–6800, Invitrogen), anti‐Bcl2 (12789‐1‐AP, Proteintech), anti‐Bax (50599‐2‐Ig, Proteintech), anti‐brain‐derived neurotrophic factor (BDNF) (ab108319, Abcam), anti‐furin (ab183495, Abcam), and anti‐β‐actin (CW0096, CWBIO). After washing with tris‐buffer saline with 0.05% Tween‐20, the membrane was incubated at room temperature for 90 min with anti‐rabbit or anti‐mouse secondary antibody conjugated with horseradish peroxide (Zhongshan Biotechnology). Immunoreactive bands were detected by the enhanced chemiluminescence detection kit (Amersham, UK) and visualized by a Bio‐Rad chemiluminescence imager.
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5

Immunohistochemical Analysis of Mouse Organs

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Paraffin embedded mice eyes and spleens were sectioned, deparaffinized, and rehydrated. Antigen retrieval was performed in a solution with 3.38% citric acid and 24.4% sodium citrate. Sections were washed in PBI (1x PBS, 0.05% Igepal). The following primary antibodies were used: rabbit anti-mouse L-ferritin (1:100; ab69090 Abcam); rabbit anti-mouse H-ferritin (1:100; ab65080 and ab183781 Abcam); goat anti-mouse collagen IV (1:20; AB769, Merck Millipore); and rabbit anti-mouse albumin (1:2000; A001, DAKO, Glostrup, Denmark). All primary antibodies were diluted in 1x PBS, 0.5% bovine serum albumin, 0.05% Igepal with 10% of donkey serum (Sigma Aldrich), except anti-albumin antibody that was diluted in PBI. Negative controls were included by omitting the primary antibody in sequential tissue sections. Secondary antibodies donkey anti-goat Alexa 488 (1:1000; Life Technology, Carlsbad, Ca, USA) and goat anti-rabbit 568 (1:1000; Invitrogen, Carlsbad, CA, USA) were incubated for 2 hours. Samples were counterstained with Hoechst (Sigma-Aldrich), mounted in Fluoromount (Sigma-Aldrich) and analyzed in a SP5 laser scanning confocal microscope (Leica Microsystems GmbH).
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6

Western Blot Analysis of Oxidative Stress Proteins

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Cells were lysed with Laemmli sample buffer (Bio-rad, 1610737) containing β-mercaptoethanol (Sigma-Aldrich) and boiled for 5 min. To separate nuclear and cytosolic fractions, a nuclear extraction kit (Abcam, ab113474) was used following the manufacturer’s protocol. Samples were loaded on 4–12% Bis-Tris gels (Life Technologies, NW04125BOX) for electrophoresis and transferred to Immobilon-FL PVDF membranes (Millipore, IPFL00010) according to standard procedures. Subsequently, membranes were blocked for 1 h in Odyssey Li-COR blocking buffer. After blocking, membranes were probed overnight at 4 °C with primary antibodies diluted in Odyssey Li-COR blocking buffer followed by 1 h incubation with IRDye-labeled secondary antibodies at room temperature. Membranes were visualized with an Odyssey SA infrared imaging system (Li-COR Biosciences). The following primary antibodies were used: mouse anti-HMOX1 (Abcam, ab13248), rabbit anti-FTH1 (Abcam, ab183781), rabbit anti-GPX4 (Abcam, ab125066) and mouse anti-β-actin (Abcam, ab8226). IRDye® 800CW goat anti-rabbit (Li-Cor, Li 926-32211) or IRDye® 680RD goat anti-mouse (Li-Cor, LI 926-68070) were purchased from Li-COR Biosciences.
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7

Ferritin Subunits Quantification by Western Blot

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Protein lysates
were obtained by homogenizing cells in a RIPA buffer supplemented
with protease inhibitors (Roche Diagnostics). Protein concentration
was measured by using the DC Protein Assay Kit II system (5000112,
Bio-Rad). 50 μg of total protein extracts were separated by
12% SDS-PAGE and analyzed by Western blotting using antibodies against
anti-Ferritin Heavy Chain 1 (FtH1; ab183781, Abcam) or Ferritin-L
Antibody (FtL; ab69090, Abcam). β-Actin (A1978-200UL, Sigma-Aldrich)
was used as a loading control. Western blot images were quantitatively
acquired with the Vilber Lourmat Fusion-FX Chemiluminescence system
(Eberhardzell) and analyzed by using Fiji. Densitometric analysis
was done by calculating the ratio of FtL or FtH1 levels to actin levels
and then represented as fold change vs the nontreated (NT) sample.
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8

Western Blot Analysis of Oxidative Stress Markers

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The mouse substantia nigra or PC12 cells were lysed on ice in RIPA buffer (Beyotime, China). The lysates were centrifuged, the supernatant was collected, and the total protein concentration was determined by BCA (P0013, Beyotime, China). The protein samples were electrophoresed on 8–14% SDS gels and transferred to the PVDF membrane. Subsequently, the membranes were incubated in TBST (Tween-20) containing 5% skim milk at 25 °C. The membranes were rinsed with TBST and then incubated overnight with primary antibodies Nrf2 (1:500, A0674, abclonal, China), HO-1 (1:500, A19062, abclonal, China), GPX4 (1:1000, ab125066, aBCAm, UK), SLC7A11 (1:1000, ab175186, aBCAm, UK), FTH-1 (1:1000, ab183781, aBCAm, UK), FPN (1:500, A14884, abclonal, China) using β-actin (1:500, AC026, abclonal, China) as the internal reference protein. Thereafter, the membranes were rinsed with TBST and incubated with a secondary antibody for 1 h. After washing, the protein expression levels were detected by an enhanced chemiluminescence detection kit (KF001, Affinity, AUS).
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9

Protein Expression Analysis Protocol

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Total proteins were extracted from the tissues or cells using RIPA buffer (89901, Thermo Scientific, USA) containing protease inhibitors (36978, Thermo Scientific, USA). The supernatant was then collected by centrifugation at 4°C for 30 min at 12,000 × g. The concentration of the protein was measured using the BCA Protein Assay Kit (P0012S, Beyotime). The proteins (50 μg per sample) were isolated on 10–12% SDS-PAGE and then transferred to a polyvinylidene difluoride membrane (LC2002, Invitrogen, ThermoFisher, USA), which was blocked by 5% non-fat milk (PA201-01, BioMed, China) at room temperature for 1 h. The following primary antibodies were used for subsequent incubation: anti-PTGS2 antibody (ab15191, Abcam, UK); anti-HMGB1 antibody (ab18256, Abcam, UK); anti-GPX4 antibody (ab125066, Abcam, UK); anti-FTH1 antibody (ab183781, Abcam, UK) and anti-GAPDH antibody (ab8245, Abcam, UK). After incubation with the primary antibodies at 4°C overnight, the membrane was washed and probed by appropriate HRP-conjugated antirabbit IgG antibody (1:5,000, 7,074, Cell Signaling Technology, USA) for PTGS2, GPX4, and FTH1 or HRP-conjugated antiMouse IgG antibody (1:5,000, 70-GAM007, MultiSciences, China) at room temperature for 2 h. GAPDH served as an internal control. SignalFire™ ECL reagent (6,883, Cell Signaling Technology, USA) was used to detect the signals.
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10

Ischemic Penumbra Protein Analysis

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The ischemic penumbra of rat brain tissues (n = 6) was collected for Western blot analysis as previously described (Liu et al., 2020 (link)). The following primary antibodies were used: anti‐beta‐Actin (Abcam, ab8226, 1:1000), anti‐GPX4 (Abcam, ab252833, 1:1000), anti‐FTH1 (Abcam, ab183781, 1:1000), anti‐TF (Abcam, ab82411, 1:1000), anti‐TF receptor (Abcam, ab269513, 1:1000), anti‐HO1 (Abcam, ab68477, 1:1000), anti‐ACSL‐4 (Abcam, ab155282, 1:1000), and anti‐xCT (Invitrogen, PA1‐16893, 1:1000).
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