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9 protocols using ab108362

1

Immunoblotting Analysis of Retinal Proteins

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Single retinas were homogenized and sonicated in lysis buffer and centrifuged. Sample buffer was added to the supernatant just prior to use. Known amounts of protein (10 to 20 μg) or protein ladder were loaded into each well of an SDS-polyacrylamide gel. The Bio-Rad mini-trans blot cell system and mini protean pre-cast gells at 4–20% were used (Hercules, CA). Loading controls included GAPDH (1:1000; ab9485, Abcam, Cambridge, MA) or HSP60 (1:1000; ab45134, Abcam). The protein was transferred onto nitrocellulose using the Bio-Rad trans blot turbo transfer system (Hercules, CA) and alkaline phosphatase was used for band detection. Band density was quantified by scanning the blot using an EPSON scanner and Adobe Photoshop to convert to grayscale and invert the image. Each band was selected with the same frame and set measurements were used to obtain the greay mean value for each. Antibodies used were anti-caspase 1 (1:1000; ab108362, Abcam), anti-SOD2 (1:1000; ab13533; Abcam), anti-TXNIP (1:1000; 14715, Cell Signaling Technology, Danvers, MA), anti-NLRP1 (1:1000; 4990, Cell Signaling Technology), and anti-NLRP3 (1:1000; 15101, Cell Signaling Technology).
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2

Western Blot Analysis of Inflammasome Proteins

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Hearts were homogenized in RIPA lysis buffer (9806; Cell Signaling). Protein concentration was determined by BCA kit assay (23225; Pierce Biotechnology). An equal amount of protein (30 μg) was separated by sodiumdodecyl sulphate polyacrylamide gel electrophoresis and transferred onto a nitrocellulose membrane (Bio‐Rad). Subsequently, the membrane was blocked with 5% nonfat dry milk or 3% bovine serum albumin (37520; Thermo Fisher Scientific) in TBST for 1 h (room temperature). Primary antibodies for NLRP3 (ab4207; Abcam, 1:500), ASC (sc22514; Santacruz, 1:500), caspase‐1 (ab108362; Abcam, 1:500), IL‐1β (ab9722; Abcam, 1:500), eNOS (#32027; Cell Signaling, 1:500), NOX2 (ab129068; Cell Signaling, 1:1000), NOX4 (ab133303; Abcam, 1:5000), and β‐actin (sc47778; Santa Cruz Biotechnology, 1:2000) were incubated at 4° overnight, and those were matched to their corresponding horseradish peroxidase‐conjugated secondary antibodies for 1 h (room temperature). Blots were developed with the enhanced chemiluminescence (RPN2232; GE Healthcare Life Science), scanned with the densitometer (FluorChem IS8900; Alpha Innotech, Santa Clara, CA), and quantified using NIH‐ImageJ software. Data were normalized with the corresponding internal reference β‐actin. Relative value was normalized to wild‐type control, LF‐SED.
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3

Molecular Profiling of NLRP3 Inflammasome

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Protein extractives were lysed in mammalian cell lysis buffer. Protein concentration was determined referring to a bovine serum albumin standard. Proteins were separated on 10–12% SDS-PAGE gels. Protein expression levels were determined using primary antibodies anti-NLRP3 (1:500, ab214185), anti-caspase-1 (1:500, ab108362), anti-IL-1β (1:500, ab2105), anti-HAS1 (1:500, ab198846), anti-p-p38 (1:500, ab45381) and anti-p38 (1:500, ab31828), which were purchased from Abcam (Cambridge, UK), and primary antibodies anti-CD44 (1:1000, 15675–1-AP), anti-OPN (1:1000, 22952–1-AP) were purchased from Proteintech (USA). Anti-rabbit and anti-mouse IgG secondary antibodies were purchased from Santa Cruz (USA). GAPDH (Santa Cruz, USA) was used as loading control.
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4

Protein Expression Analysis in THP-1 Cells

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Total protein was extracted from THP-1 cells using protein lysis solution. After protein quantification, electrophoresis and transmembrane, the protein samples were incubated with primary antibodies against vinculin (1:10,000 dilution; ab129002; Abcam, Cambridge, UK), AKT (1:1,000 dilution; 9271; CST, Danvers, MA, USA), phospho-AKT (1:1,000 dilution; 2211; CST), IL-1β (1:1,000 dilution; 12242; CST), IL-18 (1:1,000 dilution; ab243091; Abcam), nucleotide‐binding oligomerization domain (NOD)‐like receptor protein 3 (NLRP3; 1:1,000 dilution; AG-20B-0014-C100; AdipoGen, San Diego, CA, USA), caspase‐1 (1:10,000 dilution; ab108362; Abcam), NF‐κB p65 (1:1,000 dilution; AB32360; Abcam), or phospho‐NF‐κB p65 (1:1,000 dilution; 3033; CST) overnight at 4°C. Secondary antibodies conjugated with horseradish peroxidase (1:5,000 dilution; SA00001-1; SA00001-2; Proteintech, Rosemont, PA, USA) were incubated at room temperature for 1 h. The protein bands were visualized using an enhanced chemiluminescence kit (ECL; Advansta, Menlo Park, CA, USA). Data acquisition and analysis were performed on a gel image analyzing system equipped with Image Lab Software (Bio‐Rad, Hercules, CA, USA).
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5

Western Blot Protocol for Protein Detection

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Whole cell lysates were derived from cells or tissues using radioimmunoprecipitation assay (RIPA) lysis buffer. Proteins (20–40 μg) with SDS-loading buffer were loaded onto gels and run on SDS-PAGE; then, proteins were transferred to the polyvinylidene fluoride (PVDF) membrane. The PVDF membranes were incubated with primary antibodies against Pro-caspase-1 (1:2000, #ab179515, Abcam), caspase-1 (1:2000, #ab108362, Abcam), NLRP3 (1:2000, #ab16097, Abcam), IL-1β (1:1000, #AF-401-NA, R&D), HO-1 (1:500, #sc-10789, Santa Cruz), GAPDH (1:500, #sc-47724, Santa Cruz), β-actin (1:500, #sc-81178, Santa Cruz), Tubulin (1:1000, #556321, BD Pharmingen), FXRa (1:2000, #ab187735, Abcam), Cyp8b1 (1:2000, #ab175843, Abcam), Cyp27a1 (1:1000,#ab126785, Abcam), Sult2a1 (1:500, #sc-376629, Santa Cruz), Bsep (1:2000, #ab155421, Abcam), Mrp3 (1:500, #sc-5776, Santa Cruz), Ntcp (1:2000, #ab131084, Abcam), and BAAT (1:2000, #ab83882, Abcam). Then, appropriate horseradish peroxidase (HRP)-linked secondary antibodies were incubated for further 1 hour at room temperature. Luminal and H2O2 substrates were used for chemiluminescence detection.
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6

Western Blot Analysis of NF-κB, Caspase-1 and IL-1β

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The whole cell and cytoplasmic-nuclear proteins were extracted according to the manufacturer’s instruction (Beyotime Institute of Biotechnology). For Western blotting analysis, 40 μg/lane proteins were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA). The blots were probed with primary antibodies as described below, followed by incubation with horseradish peroxidase-conjugated goat anti-rabbit IgG as the secondary antibody (ab6721) (1:3,000 dilution). The rabbit anti-NF-κβ-p65 (ab16502) (1:200 dilution) and anti-caspase-1 antibody (ab108362) (1:1,000 dilution) were from Abcam. The rabbit anti-IL-1β antibody (sc-7884) (1:1,000 dilution) and β-actin (sc-47778) (1:1,000 dilution) were from Santa Cruz Biotechnology Inc. (Dallas, TX, USA). The proteins were visualized using enhanced chemiluminescence reagents (P0018, Beyotime Institute of Biotechnology), the signals of which were collected by the motored molecular imaging system (Tanon-5500, Tanon Science & Technology Co. Ltd., Shanghai, People’s Republic of China). Densitometric analysis was performed with the ImageJ software (n =3 rats/group).
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7

Immunohistochemical Analysis of Cell Death

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Sections were permeabilized with 1% Triton X-100 for 2 h and blocked with normal goat serum (Beyotime Institute of Biotechnology, Haiman, China) for 30 min at room temperature; the sections were incubated sequentially at 4 °C overnight with GSDME (1:500; ab175614; Abcam), caspase-3 (ab13847, 1:1500), caspase-1 (1:500; ab108362; Abcam) or mIL-1β (1 µg/ml; ab9722; Abcam) antibodies. Then incubated with mouse anti-rabbit IgG-HRP (sc-2357, 1:100) antibody for 2 h at room temperature. To visualize the signals, sections were treated with peroxidase substrate 3,3’-diaminobenzidine (DAB, 0.05%, ZSGB-Bio, China) and counterstained with hematoxylin for 1 min at room temperature. Sections were viewed and imaged under a light microscope (Ni-U; Nikon Corporation, Tokyo, Japan). Images were analyzed quantitatively using Image-Pro Plus 6.0 (Media Cybernetics, Inc., Rockville, MD, USA).
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8

Western Blot Detection of Inflammation Mediators

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The primary antibodies are as follows: rabbit polyclonal anti-collagen II antibody (ab34712, 1 : 5,000; Abcam), molecular weight 142 kDa; rabbit monoclonal anti-NLRP3 antibody (ab210491, 1 : 1,000; Abcam), molecular weight 118 kDa; rabbit polyclonal anti-NF-κB p65 antibody (AB21014, 1 : 500; AbSci), molecular weight 65 kDa; rabbit monoclonal anti-caspase-1 antibody (ab108362, 1 : 5,000; Abcam), molecular weight 45 kDa; rabbit monoclonal anti-pro caspase-1 antibody (ab179515, 1 : 1,000; Abcam), molecular weights 45 kDa and 42 kDa; mouse monoclonal anti-β-actin (60008-1-lg, 1 : 5,000, Proteintech Group), molecular weight 42 kDa; rabbit monoclonal anti-IκB-α antibody (ab32518, 1 : 10,000; Abcam), molecular weight 36 kDa; rabbit polyclonal anti-TRAIL antibody (ab231063, 2 μg/ml; Abcam), molecular weight 33 kDa; rabbit polyclonal anti-IL-1β antibody (ab150777, 1 : 1000; Abcam), molecular weight 31 kDa; and rabbit polyclonal anti-histone H2A.X (AB41012, 1 : 1,000, AbSci), molecular weight 19 kDa. β-Actin and histone H2A.X were used as internal controls. The processes of western blotting are consistent with previous articles [17 (link)–19 (link)].
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9

Protein Expression Analysis in Rat Astrocytes

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The expressions of proteins extracted from the primary astrocytes and the right cerebral cortex of rats were analyzed by Western blot. Proteins in the samples were separated on a 12% sodium dodecyl sulfate (SDS)/polyacrylamide gel and transferred onto polyvinylidene fluoride membranes (Millipore, USA). The membranes were incubated with the primary antibodies including anti-caspase-1 (1:500, ab108362, Abcam Cambridge, UK); anti-NLRP3 (1:1, 000; Cryo-2, AdipoGen); anti-ASC (N-15) (1:1, 000; Santa Cruz), anti-HMGB-1 (1:500, ab79823, Abcam Cambridge, UK), anti-RAGE (1:500, ab181293, Abcam Cambridge, UK), PPAPɤ (1: 1000, ab41928, Abcam Cambridge, UK), GAPDH (1:5000, #5014, Cell Signaling Technology, USA) and Histone H3 (1:1000, #12648, Abcam Cambridge, UK, loading control for nuclear proteins) at 4 °C overnight. Immuno-reactive bands were visualized by increased chemiluminescence (Millipore, USA) using corresponding horseradish peroxidase-conjugated IgG secondary antibodies (Cell Signaling Technology, USA). The images were captured with the gel imager (UVITEC, UK) and quantified using Quantity One software (Bio-Rad, USA).
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