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Tetramethylrhodamine phalloidin

Manufactured by Merck Group
Sourced in United Kingdom

Tetramethylrhodamine–phalloidin is a fluorescent dye used in microscopy to label and visualize actin filaments in cells. It binds specifically to F-actin, allowing for the observation of the cytoskeleton structure.

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5 protocols using tetramethylrhodamine phalloidin

1

Cell Spreading Assay for Morphology Evaluation

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A cell spreading assay was performed as previously described.24 (link) MDA-MB-231 controls and AIF1L-overexpressing cells were resuspended in serum-free medium. A total of 5×104 cells were added to Matrigel-coated glass coverslips. Sixty minutes after plating, cells were fixed with 4% paraformaldehyde for 20 minutes at room temperature. After washing with PBS, 0.1% Triton X-100 (in PBS) was added for 10 minutes at room temperature. Cells were blocked with 10% normal goat serum for 10 minutes at room temperature. Cells were incubated with 0.5 µM tetramethylrhodamine-phalloidin (Sigma-Aldrich) for 1 hour at room temperature and counterstained with 4′,6-diamidino-2-phenylindole to visualize nuclei. Coverslips were imaged using epifluorescence microscopy (Nikon Corporation, Tokyo Japan). Images were processed with ImageJ software to measure the areas of the cell and nucleus. Circularity and aspect ratio were used to measure cell shape as previously described.25 (link),26 (link) Both cell circularity and aspect ratio were used to measure the roundness of a cell. Over 50 cells were quantified per sample. The experiment was performed in three technical replicates.
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2

Actin Filament Staining Protocol

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For staining of the actin filaments, tetramethylrhodamine–phalloidin (Sigma P1951, UK) was used according to the manufacturer's instructions. Cells were visualized using an Olympus BX50 fluorescence microscope (Olympus, Tokyo, Japan).
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3

Staining of Actin Filaments and Immunofluorescence Analysis

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For staining of the actin filaments, a 5 mg/mL stock solution of tetramethylrhodamine–phalloidin (Sigma P1951) was prepared in methanol and used according to the manufacturer's instructions.
Immunofluorescence staining for phospho‐Met, c‐Met, and HGF were carried out as described previously.35 Staining was carried out using primary antibodies against phospho‐Met (Y‐1234/1235) (cs‐3129), c‐Met (sc‐161), and HGF (sc‐1387) prepared in blocking solution. Cells were visualized using an Olympus BX50 fluorescence microscope (Olympus, Tokyo, Japan).
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4

Quantitative Analysis of AIPL-1::GFP Fluorescence in Worms

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Staining of worms with tetramethylrhodamine-phalloidin (catalog # P1951, MilliporeSigma, St. Louis, MO) was performed as described (28 (link), 89 (link)). Samples were observed by epifluorescence using a Nikon Eclipse TE2000 inverted microscope (Nikon Instruments, Tokyo, Japan) with a CFI Plan Fluor ELWD 40 × (NA 0.60) objective. Images were captured by a Hamamatsu ORCA Flash 4.0 LT sCMOS camera (Hamamatsu Photonics, Shizuoka, Japan) and processed by NIS-Elements AR V5.02.01 (Nikon Instruments) and Adobe Photoshop CS3.
To measure fluorescence intensity of AIPL-1::GFP, live worms were mounted and immobilized with 25% Pluronic F-127 (catalog # 2730-50G, Biovision, Milpitas, CA) in M9 buffer containing 0.5 mM levamisole and 0.1% tricaine methanesulfonate. Fluorescence images were captured with the same settings for all samples in NIS-Elements using a Nikon Eclipse TE2000 inverted microscope with a CFI Plan Fluor ELWD 40 × (NA 0.60) objective. Fluorescence intensity of each worm was determined using ImageJ as average fluorescence intensity at 10 randomly selected points within the cytoplasm of the body wall muscle in the head region.
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5

Quantitative Analysis of AIPL-1::GFP Fluorescence in Worms

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Staining of worms with tetramethylrhodamine-phalloidin (catalog # P1951, MilliporeSigma, St. Louis, MO) was performed as described (28 (link), 89 (link)). Samples were observed by epifluorescence using a Nikon Eclipse TE2000 inverted microscope (Nikon Instruments, Tokyo, Japan) with a CFI Plan Fluor ELWD 40 × (NA 0.60) objective. Images were captured by a Hamamatsu ORCA Flash 4.0 LT sCMOS camera (Hamamatsu Photonics, Shizuoka, Japan) and processed by NIS-Elements AR V5.02.01 (Nikon Instruments) and Adobe Photoshop CS3.
To measure fluorescence intensity of AIPL-1::GFP, live worms were mounted and immobilized with 25% Pluronic F-127 (catalog # 2730-50G, Biovision, Milpitas, CA) in M9 buffer containing 0.5 mM levamisole and 0.1% tricaine methanesulfonate. Fluorescence images were captured with the same settings for all samples in NIS-Elements using a Nikon Eclipse TE2000 inverted microscope with a CFI Plan Fluor ELWD 40 × (NA 0.60) objective. Fluorescence intensity of each worm was determined using ImageJ as average fluorescence intensity at 10 randomly selected points within the cytoplasm of the body wall muscle in the head region.
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