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5 protocols using jms gc mate 2

1

NMR and GC-MS Characterization of Volatile Compounds

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NMR spectra were acquired on a Varian Unity INOVA at 400 MHz (1H) and 100 MHz (13C). The major volatile compound was identified based on NMR spectroscopy (1H, 13C, COSY, HSQC, HMBC, Varian, Santa Clara, CA, USA).
Analyses by GC/MS were carried out in an Agilent 7890 A series gas chromatograph (Agilent Technology, Palo Alto, CA, USA) coupled with a JEOL JMS-GC Mate II mass spectrometer (JEOL USA, Peabody, MA, USA). Compounds were separated on an Agilent Technology DB-5MS (30 m × 0.25 mm, film thickness 0.25 μm) capillary column, using the following GC oven temperature program: 1 min at 40 °C, followed by 8 °C/min up to 300 °C, held for 6 min. Helium was used as the carrier gas at a flow rate of 1 mL/min. The electronic ionization energy was 70 eV, and the mass range scanned was 1–600 uma. Scan rate was 1 spec/s. Transfer line and ionization chamber temperatures were 300 °C. Data acquisition and processing were performed with TSS pro 3.0 software system (Shrader Analytical and Consulting Laboratories, Detroit, MI, USA); mass spectra were compared with the National Institute of Standards and Technology-2 (NIST-2) data base. The components were identified based on the comparison of the relative retention indices calculated using a series of n-alkanes (C-8–C-20) and the mass spectra from the spectrometer database (NIST library), followed by comparison with published data.
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2

NMR and HPLC Analysis of Compounds

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1 H NMR (400 MHz) spectra were recorded with JEOL JNM-ECZ400S (JEOL, Akishima, Japan) or JEOL HNM-ECX400 NMR spectrometers in the indicated solvent. EI-MS spectra were recorded on a JEOL JMS-GCmateII. The purities of compounds were determined based on the results of HPLC analysis on Shimadzu LC-20AD separations module with SPD-20A photodiode array detector (Shimadzu, Kyoto, Japan).
The sample was applied on a YMC-Triart C 18 column (2.1 mm x 50 mm, 5 µm) and eluted at 1 mL/min with 0.5 min (20% B), then 5 min gradient (20 % B to 100% B) and then maintaining the final condition for 3.5 min, where solvent A was water (0.1% H 3 PO 4 buffer) and solvent B was acetonitrile.
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3

Direct Injection Electron Ionization Mass Spectrometry

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DI-EI-MS analysis was performed according to our previous report [20 (link)]. In the present study, the electrons were accelerated at 70 eV in the region between the filament and the entrance to the ion source block. EI-MS was conducted using a double-focusing mass spectrometer (JMS GC-mate II; JEOL, Tokyo, Japan) equipped with a heated direct-injection sample probe. The MS detector parameters used were as follows: interface temperature, 320 °C; ion-source temperature, 280 °C; ionization mode, EI; electron energy, 70 eV; scan speed, 0.3 s/scan; interdelay, 0.2 s; scan range, m/z 50−500; accelerating voltage, 2500 V; ionization current (emission), 0.3 mA; and variable temperature duration, 0.5−2.5 min. A 1 μL aliquot of the test sample in water (5 mg/mL) was injected into the DI-EI-MS system. A microsyringe was used to load a drop (1 μL) of each extract solution onto a glass target, which was then loaded into the direct-injection sample probe (MS-DIP25). The integration analysis covered the range of approximately scans 120−360 of the total ion chromatogram (TIC). The TIC was monitored for 2.5 min, and all of the fragment ions between 0.8 and 2.5 min were added.
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4

Prostaglandin A2 and LPS-Induced iNOS Inhibition

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Chemicals and solvents were of the highest grade available and used as received from commercial sources. LPS (Escherichia coli. sc-3535) was purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). PGA2 ((15S)-prostaglandin A2) and L161982 were purchased from Cayman Chemical Company (Ann Arbor, MI, USA). Polymyxin B (PMB) was procured from Wako (Tokyo, Japan). Monoclonal antibody against iNOS was purchased from Abcam (Cambridge, MA, USA). Monoclonal antibodies against IκBα and α-tubulin were procured from Cell Signaling Technology (Danvers, MA, USA). NMR spectra were recorded with a JEOL HNM-ECX400 FT NMR spectrometer (JEOL, Tokyo, Japan). Mass spectra (EIMS) were obtained on a JEOL JMSGC MATE II (JEOL). Optical rotation was measured on a JASCO P-2200 polarimeter (JASCO, Tokyo, Japan) using a microcell (light path, 100 mm). HPLC was carried out using an LC-10ATVP pump (Shimadzu, Tokyo, Japan) with an SPD-10AVVP UV detector (Shimadzu).
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5

Synthesis and Characterization of Compound 1a

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General Remarks All melting points were determined using a Yanagimoto hot-stage melting point apparatus and are uncorrected. 1 (link) H-NMR and 13 (link) C-NMR spectra were measured on Bruker AVANCE500 (500 MHz for 1 H and 126 MHz for 13 C) spectrometer. Both 1 H-and 13 (link) C-NMR spectral data are reported in parts per million (δ) relative to tetramethylsilane (Me 4 Si). IR spectra were recorded on a JASCO FT/IR-4100 spectrometer. Low-and high-resolution (LR/HR)-MS were obtained with a JEOL JMS-GC mate II or a JEOL JMS-700 spectrometer with a direct inlet system at 70 eV. X-ray crystallographic data were recorded on a Rigaku VariMax SaturnCCD724/α diffractometer using graphite monochromated Mo-Kα radiation at the Advanced Research Support Center, Ehime University.
Materials and Methods Dimethyl sulfoxide (DMSO) (Wako Pure Chemical Industries, Ltd., Osaka, Japan) was used as solvent control. Kanamycin (Wako Pure Chemical Industries, Ltd.), Gentamicin (Wako Pure Chemical Industries, Ltd.), Linezolid (Wako Pure Chemical Industries, Ltd.), Norfloxacin (Wako Pure Chemical Industries, Ltd.) and AgNO 3 (Nacalai Tesque, Kyoto, Japan) were used as standard drugs.
was prepared by the literature method. 24) (link) 1a: mp 160-162°C (mp 24) 165°C).
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