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4 protocols using dactolisib

1

Preparation and Dilution of PI3K Inhibitors

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The PI3K pathway inhibitors vistusertib (HY-15247, MedChem Express), everolimus (E-4040, LC Laboratories), dactolisib (N-4288, LC Laboratories), and sapanisertib (I-3344, LC Laboratories), were dissolved in DMSO to a 10 mmol/L stock concentration. Copanlisib (HY-15346, MedChem Express) was dissolved in 10 mmol/L TFA/DMSO to a 5 mmol/L stock concentration. Described inhibitors were diluted in fresh media at concentrations ranging from 5 nmol/L to 500 nmol/L for diameter studies.
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2

Culturing GIST-T1 and GIST-T1/670 Cells

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GIST-T1 and GIST-T1/670 were kindly provided by Dr. César Serrano from Vall d’Hebron Institute of Oncology. These cells were cultured in IMDM medium (ThermoFisher Scientific, Waltham, MA, USA) supplemented with 15% of fetal bovine serum (FBS) (10270106, ThermoFisher Scientific), 1% of penicillin/streptomycin (15140122, Gibco ThermoFisher Scientific) and 1% of L-glutamine (25030024, ThermoFisher Scientific) at 37 °C and 5% of CO2. Imatinib, dactolisib, and gefitinib were obtained from LC Laboratories (Woubourn, MA, USA); venetoclax was purchased at MedChemExpress (Monmouth Junction, NJ, USA), and repretinib from Selleckchem (Munich, Germany). All treatments were diluted in dimethyl sulfoxide (DMSO) (D8418, Sigma-Aldrich, Saint Louis, MO, United States).
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CLL Cell Isolation and Culture

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All work with primary human material was performed in compliance with the national and local regulations. Primary CLL cells were isolated from peripheral blood and bone marrow of CLL patients via Biocoll (Biochrom AG) density gradient centrifugation and cultured in RPMI 1640 medium supplemented with 10% FCS, penicillin (62.5 μg/ml) and streptomycin (100 μg/ml) at a density of 1*106 cells/ml. MEC1 cells (ATCC) were cultured in IMDM medium containing 10% FCS, penicillin and streptomycin. Cells were split twice a week at a density of 106 cells per ml medium. For lentiviral packaging, HEK293FT (ATCC) cells were grown in DMEM supplemented with 10% fetal bovine serum (Life Technologies), penicillin and streptomycin, L-glutamate (100x concentrate, Invitrogen) and essential amino acids (100x concentrate, Life Technologies) and split three times a week in a ratio of 1:5. Dactolisib, pictilisib, rapamycin, wortmannin (LC Laboratories) and GANT61 (Merck) were dissolved in DMSO, stored as stock solution at −20 and diluted to final concentrations as indicated in the results section.
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4

Primary CLL Cell Isolation and Culture

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All work with primary human material was performed in compliance with the national and local regulations. Primary CLL cells were isolated from PB and BM of CLL patients via Biocoll (Biochrom AG, Berlin, Germany) density gradient centrifugation and cultured in RPMI 1640 medium supplemented with 10% fetal calf serum, penicillin (62.5 μg/ml) and streptomycin (100 μg/ml) at a density of 1 × 106 cells/ml. MEC1 cells (ATCC, Manassas, VA, USA) were cultured in IMDM medium containing 10% fetal calf serum, penicillin and streptomycin. Cells were split twice a week at a density of 106 cells per ml medium. For lentiviral packaging, HEK293FT (ATCC) cells were grown in DMEM supplemented with 10% fetal bovine serum (Life Technologies), penicillin and streptomycin, L-glutamate (100x concentrate, Life Technologies) and essential amino acids (100 × concentrate, Life Technologies) and split three times a week in a ratio of 1:5. Dactolisib, pictilisib, rapamycin, wortmannin (LC Laboratories, Woburn, MA, USA) and GANT61 (Merck, Darmstadt, Germany) were dissolved in dimethylsulfoxide, stored as stock solution at −20 and diluted to final concentrations as indicated in the Results section.
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