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5 protocols using anti p100 p52

1

Antibody Panel for Cell Signaling Analysis

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Antibodies used were: anti-EZH2 (3147S Cell Signaling), anti-p52/p100 (05-361 Millipore), anti-RelB (4954S Cell Signaling), anti-p53 (DO-1 sc-126 Santa Cruz), anti-β- Actin (A5441, Sigma), anti-p21 (sc-397 Santa Cruz), anti-Rb (sc-50 Santa Cruz), anti- Cdk4 (sc-260 Santa Cruz), anti-DEK (610948 BD transduction Laboratories), anti-Bcl3 (PA1-41087 Pierce), anti-Lamin B1 (sc-374015 Santa Cruz), anti-p50 (3035S Cell Signaling), anti-MDM2 (OP46 Calbiochem), anti-p130 (610261 BD transduction Laboratories), anti-p107 (sc-318 Santa Cruz), anti-PSMA5 (2457S Cell Signaling), anti-p14ARF (14PO2 Calbiochem), anti-p16INK4a (sc-56330 Santa Cruz), anti MnSOD (sc-133134 Santa Cruz). Phospho-antibodies used were S15-p53 (9284S Cell Signaling) and S780- Rb (8180S Cell Signaling). Lymphotoxin β receptor agonist antibody (anti-HuLTβR:Fc Ab) was a kind gift of Prof. Carl Ware (Sanford/Burnham Medical Research Institute) [64] (link).
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Plasmids, Recombinant Proteins, and Antibodies

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Plasmids, recombinant proteins and antibodies DDX3 and K7 expression constructs (in pCMV-myc, pCMV-Ha or pHisParallel2) have been described in our previous studies [3, (link)4] (link). IKKα-Flag and NIK-Flag were provided by Prof. Luke O'Neill (Trinity College Dublin), and Flag-IRF7 was provided by Prof. Kate Fitzgerald (University of Massachusetts). GST (glutathione-S-transferase)-IRF7 (aa 468-503) peptides and constructs were kindly provided by Prof. John Hiscott and Dr Qiang Sun (McGill University, Montreal). Purified recombinant protein kinase GST-IKKα was purchased from Millipore and recombinant GST-NIK was purchased from Proqinase (Freiburg, Germany). The antibodies used were anti-Flag-M2 mAb (Sigma-Aldrich), anti-Myc mAb clone 9E10 (Sigma-Aldrich), anti-HA (hemagglutinin) mAb (Covance), anti-DDX3 (Santa Cruz or Bethyl Laboratories), anti-p52/p100 (Millipore), anti-IRF7 (Santa Cruz), anti-IKKα, anti-phospho-Ser176/180-IKKα, anti-phospho-Ser 866/ 870-p100, and anti-phospho-Ser471/472-IRF7 (all Cell Signaling Technology), anti-His (Sigma-Aldrich), and anti-GST (Promega). Secondary AlexaFluor488-and AlexaFluor594-coupled antibodies were purchased from Invivogen.
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Antibody and Compound Usage in Study

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The following primary antibodies and materials were used in this study: anti-p100/p52 (Millipore); anti-c-IAP1 (Enzo Life Sciences, Farmingdale, NY, USA); anti-c-IAP2 (Cell Signaling, Danvers, MA, USA); anti-GST, anti-p65, and anti-RelB (Santa Cruz Biotechnology, San Diego, CA, USA); anti-phospho-JNK, anti-JNK, anti-phospho-ERK, and anti-ERK (Cell Signaling); anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA); Birinapant (ChemieTek, Indianapolis, IN, USA); Enbrel (University of Michigan Hospital pharmacy); z-VAD-fmk (Cayman Chemical, Ann Arbor, MI, USA); Trametinib (LC Laboratories, Woburn, MA, USA); and SP600125 (SelleckChem, Houston, TX, USA). The Smac mimetic SM-164 (37 (link)) was a kind gift from Dr. Shaomeng Wang (University of Michigan).
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Evaluating CD40-mediated Activation in U2OS and iDCs

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To evaluate CD40-mediated activation we analyzed p100 processing and TRAF1 induction in U2OS cells and iDCs by western blotting. For western blot, coculture experiments were performed in six well plates (106 +106 cells per well). For stimulation of iDCs 0.8 × 106 cells per well were seeded also in 6-well plates and stimulated overnight. Cells were collected in ice-cold PBS by scraping with a rubber policeman. Cells were then washed twice with fresh ice-cold PBS, pelleted (5 min, 4°C, 4630 g) and resuspended in Laemmli buffer. Samples were sonicated for 25 seconds at 100% amplitude with a sonication probe (UP100H Ultrasonic Processor, Helscher, Germany), heated at 95°C for 5 min and subjected to SDS-PAGE separation. After transfer of proteins to a nitrocellulose membrane western blot analysis was performed with an anti-p100/p52 (#05–361, Millipore), anti-TRAF1 (#4715), anti-A20 (#5630, both Cell Signaling Technology Beverly, MA, USA), anti-β-actin (#A1978–200), anti-Flag (M2) (#F-3165, both Sigma Aldrich) and horseradish peroxidase (HRP)-conjugated polyclonal rabbit anti-mouse antibody (#P0260, Dako, Glostrup, Denmark) or HRP-coupled anti-rabbit antibody (#7074, Cell Signaling Technology Beverly, MA, USA). Finally, membranes were developed by chemiluminescence western blot detection using ECL solution.
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5

Antibody and Compound Usage in Study

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The following primary antibodies and materials were used in this study: anti-p100/p52 (Millipore); anti-c-IAP1 (Enzo Life Sciences, Farmingdale, NY, USA); anti-c-IAP2 (Cell Signaling, Danvers, MA, USA); anti-GST, anti-p65, and anti-RelB (Santa Cruz Biotechnology, San Diego, CA, USA); anti-phospho-JNK, anti-JNK, anti-phospho-ERK, and anti-ERK (Cell Signaling); anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA); Birinapant (ChemieTek, Indianapolis, IN, USA); Enbrel (University of Michigan Hospital pharmacy); z-VAD-fmk (Cayman Chemical, Ann Arbor, MI, USA); Trametinib (LC Laboratories, Woburn, MA, USA); and SP600125 (SelleckChem, Houston, TX, USA). The Smac mimetic SM-164 (37 (link)) was a kind gift from Dr. Shaomeng Wang (University of Michigan).
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