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119 protocols using gapdh antibody

1

Western Blot Analysis of NEK6 Protein

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Proteins in cells were extracted with precooled radioimmunoprecipitation assay buffer (catalog number: P0013C; Beyotime, Shanghai, China), and protein quantification was performed using a BCA protein concentration determination kit (catalog number: P0012S; Beyotime). Electrophoresis was performed on a 10% sodium dodecyl sulfate-polyacrylamide gel, and the proteins were then transferred to polyvinylidene fluoride (PVDF) membranes (catalog number: IPFL00010; Millipore, Shanghai, China). After incubation with 5% skim milk at 25°C for 2 h, the PVDF membranes containing the proteins were incubated with diluted NEK6 antibody (catalog number: 10378-1-AP; dilution rate: 1 : 1000; Proteintech, Wuhan, China) or GAPDH antibody (catalog number: 10494-1-AP; dilution rate: 1 : 5000; Proteintech) at 25°C for 2 h. After washing, the PVDF membranes were incubated with diluted goat anti-rabbit IgG modified with horseradish peroxidase (catalog number: SA00001-2; dilution rate: 1 : 2000; Proteintech) at 25°C for 1 h. After washing, the PVDF membranes were covered with BeyoECL Moon (catalog number: P0018FM; Beyotime) for exposure. Quantification by densitometry was performed using ImageJ 1.52v (NIH, Bethesda, MD, USA). GAPDH was used as an internal control.
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2

Stem Cell Differentiation Protocol

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Fentanyl citrate was obtained from Northeast Pharmaceutical Group (China). The sources of reagents were as follows: Sox2, Oct4, N-cadherin, Vimentin, E-cadherin, β-catenin, GSK-3β, CD44, Cyclin D1, and GAPDH antibody (Proteintech, China); Nanog antibody (Abcam, USA); FUT8, c-Jun and VEGF antibody (Santa Cruz, USA); Lens culinaris agglutinin (LCA) Lectin, binding of α1, 6-fucosylation epitope. (Vector Laboratories, USA); p-GSK-3β (Ser9) antibody (Elabscience, China); LGK-974 (inhibitor of Wnt ligands) (Selleck, USA).
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3

Whole-cell Protein Extraction and Western Blot

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Whole-cell lysates were prepared in lysis buffer (10mM Tris-HCl, pH 8, 140mM NaCl, 5mM EDTA, 0.025% NaN3, 1% Triton X-100, 1% deoxycholate, 0.1% SDS, 1mM PMSF, 5 μg ml−1 leupeptin, 2 μg ml−1 aprotinin, 50mM NaF, and 1mM Na2VO3). Then the lysates (40–50 μg) were resolved by SDS-PAGE. Proteins were transferred to a PVDF membrane (Millipore) that was incubated with following primary antibodies: anti-PAR1 antibody (NOVUS Biologicals, NBP1-71770), anti-PAR2 antibody (Abcam, ab180953), anti-p62 antibody (Abcam, ab219581), LC3A/B antibody (Cell Signaling #4108), GAPDH antibody (Proteintech, 10494-1-AP). All primary antibodies were used at a dilution of 1:1000. Subsequently, incubation was done with horseradish peroxidase-conjugated goat anti-rabbit IgG(H + L) (light chain specific) (Jackson Immunoresearch, #115-035-174) at a dilution of 1:5000, except that horseradish peroxidase-conjugated goat anti-mouse IgG(H + L) (Jackson Immunoresearch, #115-035-003) was used as the secondary antibody for anti-PAR1 antibody. After incubation, proteins were detected by enhanced chemiluminescence (GE).
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4

Ferroptosis-related Protein Regulation

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Ferric ammonium citrate (USA, 1185-57-5) was purchased from Sigma–Aldrich. Recombinant mouse IL-1β (Minneapolis, USA, # 401-ML) was purchased from R&D systems. Erastin (USA, S7242) and Ferrostatin-1 (USA, S7243) were purchased from Selleck. Reactive Oxygen Species Assay Kit (China, S0033) was purchased from Beyotime. C11 BODIPY Lipid Peroxidation Sensor (USA, D3861) was purchased from ThermoFisher. GPX4 (UK, ab125066, diluted 1:5000) antibody, P53 antibody (UK, ab131442, diluted 1:1000), SLC7A11 antibody (UK, ab175186, diluted 1:5000), ACSL4(UK, ab155282, diluted 1:10,000) antibody, Collagen II (UK, ab34712, diluted 1:200 for immunohistochemical staining) antibody, Collagen II (UK, ab185430, diluted 1:1000 for western blot) antibody, NQO-1 antibody (UK, ab80588, diluted 1:10,000), and Trx (UK, ab133524, diluted 1:10,000) antibody were purchased from Abcam. Nrf2 antibody (USA, 16396-1-AP, diluted 1:1000), HO-1 antibody (USA, 10701-1-AP, diluted 1:1000), Beta-actin antibody (USA, 66009-1-Ig, diluted 1:1000) and GAPDH antibody (USA, 60004-1-Ig, diluted 1:1000) were purchased from Proteintech.
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5

Molecular Mechanisms of Inflammation

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Utilizing qRT-PCR, the mRNA abundance of PTGS2, COX-2, ST2, IL-6, and IL-33 was assessed. As a loading control, the common GAPDH gene was amplified concurrently. The RIPA lysis buffer with inhibitors of protease and phosphatase was used to recover cellular protein. According to the procedure outlined previously, the protein expressions of ST2, IL-33, p38, COX-2, p-p38, p-p65, p65, p-JNK, JNK, p-ERK, and ERK were evaluated using western blotting. Loading controls were conducted by exploring the blot with an antibody of GAPDH for the concentrated conditioned culture medium. The direct antibodies utilized for WB in this analysis were included ST2 (1; 1,000; PTMab), phosphorylated p38 (1:500; GeneTex), p38 (1:500; PTMab), phosphorylated ERK1/2 (1:500; GeneTex), ERK1/2 (1:500; GeneTex), JNK (1:1,000; GeneTex), phosphorylated JNK (1:1,000; GeneTex), p65 (1:1,000; GeneTex), phosphorylated p65 (1:1,000; GeneTex), PTGS2 (1:1,000; GeneTex) (all from Cell Signaling, Danvers, MA), IL-33 (1:1,000; GeneTex), and GAPDH antibody (1:10,000; Proteintech).
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6

Berberine and Ibuprofen Anti-inflammatory Mechanisms

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Berberine chloride dihydrate (Berberine hydrochloride, purity: 98%) was obtained from Yuanye Inc. (Shanghai, China) and Ibuprofen (purity: 98%) was obtained from Aladdin (Shanghai, China). Both of them were used directly after purchase. All other solvents were analytically pure. Deionized water was used in this study. All plasmids were supplied by Shanghai GenePharma Co. Ltd (Shanghai, China). Sources of antibodies were as follows: IKKε antibody (Cell SignalingTechnology, 2690), TBK1 antibody (Cell Signaling Technology, 3013), Phospho-TBK1 Ser172 antibody (Cell Signaling Technology, 5483), Phospho-AMPKα Thr172 antibody (Cell Signaling Technology, 2535), Anti-UCP1 antibody (Abcam, ab10983), F4/80 antibody (proteintech, 28463-1-AP), GAPDH antibody (proteintech, 60004-1-Ig), Anti-rabbit IgG (Cell Signaling Technology, 7074 S), Anti-mouse IgG (Cell Signaling Technology, 7076 S), CL488-conjugated Affinipure Goat Anti-Mouse lgG (H + L) (proteintech, SA00013-1), CL488-conjugated Affinipure Goat Anti-Rabbit lgG (H + L) (proteintech, SA00013-2). 3-Isobutyl-1-methylxanthine (IBMX), dexamethasone (DEX), insulin, ISO and Oil Red O solution (0.5% in isopropanol) were purchased from Sigma-Aldrich (St Louis, MO, USA). Recombinant Murine TNF-α was purchased from Pepro Tech (Rocky Hill, NJ, USA). The BCA protein assay kit was purchased from Beyotime Biotechnology Co., Ltd (Beijing, China).
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7

Quantifying Cas12a Fusion Protein Expression

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Cells were observed 2 days after transfection. Thirty minutes before imaging, the culture medium was changed to FluoroBrite medium (ThermoFisher) with 40 μM DFHBI-1T and 0.1 μg/ml Hoechst. Live cell fluorescence images were acquired on a Nikon microscope.
Western blotting
Cells were lysed in 2X SDS loading buffer (200 mM β-mercaptoethanol, 100 mM Tris pH 6.8, 20% glycerol, 4% SDS, 0.05% bromophenol blue). The lysates were separated by SDS-PAGE and transferred onto the NC membrane, followed by blocking with 5% milk in TBST solution and incubation with primary antibody overnight at 4 °C and secondary antibodies for 1h at room temperature. Finally, the NC membrane was incubated with Immobilon Western Chemiluminescent HRP Substrate (Millipore) and imaged by Gel Imager System. Antibodies included Anti-HA-tag antibody (MBL, M180-3) for dLbCas12a-p300, dLbCas12a-VPR, dLbCas12a-SunTag, scFv-sfGFP-VP64, scFv-sfGFP-VPR, LbCas12a, dAsCas12a-VPR, AsCas12a, and CasRx. Anti-Tubulin antibody (Proteintech, 66240), GAPDH antibody (Proteintech, 60004), and HRP-conjugated horse anti-mouse IgG secondary antibody (CST 7076S).
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8

Immunofluorescence Assay for EV-A71 Infection

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Cells cultured in 96-well black plate were infected with EV-A71 for 24 h, then cells were fixed by 4% paraformaldehyde for 15 min, permeabilized in 0.5% Triton X-100 for 15 min, and blocked with Odessey Blocking Buffer for 1 h at room temperature. Cells were immunolabeled for 2 h at room temperature with GAPDH antibody (1:1,000 dilution, Proteintech) and EV-A71-VP1 antibody (1:1,000 dilution, GeneTex), 1 h with IRDye 800CW Goat anti-Mouse (1:1,000 dilution, LI-COR, USA) and IRDye 680RD Goat anti-Rabbit secondary antibodies (1:1,000 dilution, LI-COR). After washing with PBST, images were taken with Odessey CLx (LI-COR USA) [49 (link)].
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9

Western Blot Analysis of NSCs and MSCs

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The western blot assay was performed as described previously (Yu et al., 2016 (link)). NSCs and MSCs were prepared using RIPA buffer. The lysate protein concentrations were determined using a BCA protein assay kit (Beyotime Biotechnology, Nanjing, China). The protein samples were denatured in Laemmli buffer at 100°C for 10 min before electrophoresis, and were then subjected to 10% SDS-PAGE before being electrotransferred to polyvinylidene difluoride membranes with a standard transfer solution. After blocking with 10% nonfat milk, membranes were incubated with primary antibodies against β-tubulin III (1:1,000; Abcam, Cambridge, MA), MAP2 (1:1,000; Abcam, Cambridge, MA), Runx2 (1:1,000; Abcam, Cambridge, MA), BMP-2 (1:2000; ProteinTech Group), and OPN (1:2000; ProteinTech Group), and GAPDH antibody as a control (1:5,000; ProteinTech Group). Proteins were visualized by chemiluminescence using an ECL kit (Share-Bio, Jinan, China).
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10

Profiling K(v)4.3 Protein Localization

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Total protein lysates and plasma membrane proteins were extracted from HEK293 cells co-transfected KChIP2 with wild type or mutant Kv4.3 after 48 hours following a standard protocol as previously described [38 ]. Plasma membrane proteins were isolated by the Pierce Cell Surface protein Isolation Kit (Thermo Scientific, Waltham, MA, USA). The total proteins or plasma membrane proteins were subjected to western blot analysis using a polyclonal anti-Kv4.3 antibody (Alomone, Jerusalem, Israel) or GAPDH antibody (Proteintech Company, Wuhan, China).
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