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387 protocols using anti e cadherin

1

Immunohistochemical and Immunofluorescence Staining Protocol

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Immunohistochemical staining was performed using Biotin-Streptavidin horseradish peroxidase (HRP) Detection Systems (SP-9000, ZSGB-BIO, Beijing, China). The tissue sections were incubated with 3% H2O2 deionized water for 10 min and blocked with goat serum (SP-9000, Reagent A) at room temperature. Then, the tissue sections were incubated with rabbit polyclonal anti-KLF4 (1:2,000 dilution, Cat. No. ab215036; San Francisco, Abcam), rabbit polyclonal anti-E-cadherin (1:400 dilution, Cat. No. 3195T; Danvers, CST), rabbit polyclonal anti-vimentin (1:3,000 dilution, Cat. No. 10366-1-AP; Rosemont, Proteintech) primary antibodies overnight at 4°C.
Immunofluorescence staining was performed to detect KLF4, E-cadherin, and vimentin expression. The tissue sections were blocked with 5% bovine serum albumin (BSA) and incubated with rabbit monoclonal anti-KLF4 (1:500 dilution, Cat. No. ab214666; San Francisco, Abcam), rabbit polyclonal anti-E-cadherin (1:200 dilution, Cat. No. 3195T; Danvers, CST), and rabbit monoclonal anti-vimentin (1:400 dilution, Cat. No. ab92547; San Francisco, Abcam) primary antibody overnight at 4°C separately. The tissue sections were incubated with GoatAnti-Rabbit IgG H&L(HRP) (1:300 dilution, Cat. No. ab6721; San Francisco, Abcam) second antibody at room temperature for 1 h.
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2

Comprehensive Protein Expression Analysis

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Western blot analysis was conducted as previously described [24 (link)]. The following primary immunoblotting antibodies were used: anti-GAPDH, anti-E-cadherin, anti-Fibronectin, anti-Vimentin, anti-Snail, and anti-c-Met (Epitomics, Burlingame, CA, USA), anti-β-catenin (Proteintech, Chicago, USA), anti-N-cadherin, anti-c-myc, anti-EGFR, anti-p-EGFR (Tyr1068), anti-GSK3β, anti-p-GSK3β (Ser9), anti-AKT (pan), anti-p-AKT (Ser473), anti-stat3, anti-p-stat3 (Tyr705) and anti-CREB1 (Cell Signaling Technology, Beverly, MA).
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3

Immunofluorescence Analysis of EMT and Hypoxia

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SW480 and HCT116 cells were seeded on 12 mm round coverslides. After reaching appropriate densities, for EMT either as confluent or sparsely growing [19] (link), and as confluent growing cultures for CoCl2 treatment (3 h, 100 µM CoCl2, serum free) [21] (link), cells were fixed in the presence of 2% (v/v) formaldehyde. The following antibodies were employed: anti-β-catenin (1∶150; clone 14/Beta-Catenin, BD Biosciences, NJ, USA) and anti-E-cadherin (1∶100; clone EP6; Epitomics Burlingame, UK). Antibodies were diluted in 0.1% (w/v) saponin, counterstained with anti-Alexa-Fluor®488 (Invitrogen, Karlsruhe, Germany) and finally mounted in mounting medium containing DAPI (Vector Vectrashield Laboratories, Dossenheim, Germany). Immunofluorescence staining was detected by immunofluorescence-microscopy (Zeiss Axioscope 50, Zeiss Axiocam MRc).
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4

Quantitative Western Blot Analysis

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A total of 50 mg protein was separated by denaturing 8–15% SDS–polyacrylamide gel electrophoresis. Western analysis was conducted as previously described [12] (link). The films were analyzed by densitometry with a VersaDoc Imaging System; Model 3000 (BioRad) using Quantity One software. Analysis of variance with Bonferroni correction for multiple tests was used to determine significance. The primary antibodies used were anti-Ncadherin (1∶5000), anti-Ecadherin (1∶2000), anti-fibronectin (1∶1000), anti-vimentin (1∶1000) and anti-actin (1∶2000) as an endogenous control, all from Epitomics Biotechnology (Epitomics).
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5

Protein Expression Analysis via Western Blot

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The proteins were extracted from the treated cells using the RIPA lysis buffer method, and relatively quantified using BCA Protein Assay kit. The extracted proteins were loaded onto 10% SDS-polyacrylamide gels and electrophoresed fully. Subsequently, the separated proteins were transferred to a PVDF membrane using a wet transfer method. The membrane was blocked with 5% fat-free milk for 1 hour, and subsequently incubated with primary antibody (at 1:1000 ratio) at 4°C overnight. The membrane was washed 3 times (totally 30 min) with TBS-Tween buffer, and treated with secondary antibody (diluted with diluent as 1:5000 ratio) for 1 hour at room temperature. After washing 3 times with TBS-Tween buffer, the protein level was detected with enhanced chemi-luminescence (ECL) system (Pierce Biotechnology Inc., USA). The primary antibodies used are listed as follows: anti-GAPDH, anti-KLF4, anti-AKT, anti-p-AKT, anti-p21, anti-CCND1, anti-RB, anti-p-RB (Cell Signaling Technology, USA), anti-E-cadherin, anti-Fibronectin, anti-Snail, anti-Slug (Epitomics, USA).
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6

Western Blot Analyses of Signaling Proteins

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Cells were lysed in prechilled RIPA buffer containing protease inhibitors. The protein lysates were separated on SDS–PAGE and then transferred to PVDF membranes (Roche Diagnostics, Mannheim, Germany). The membranes were blocked for 2 h in 5% bovine serum albumin (BSA) in 1 × TBS-T (0.5% Tween-20) and incubated with the indicated primary antibodies, including anti-EHF (Abcam, Inc), anti-total-Erk1/2 (Abcam, Inc), anti-phospho-Erk1/2 (Epitomics, Inc), anti-phospho-AktSer473 (Bioworld Technology, co, Ltd), anti-total-Akt (Bioworld Technology, co, Ltd), anti-HER2 (Sino Biological, Inc), anti-HER3 (Sino Biological, Inc), anti-HER4 (Sino Biological, Inc), anti-E-cadherin (Epitomics, Inc), anti-Vimentin (Epitomics, Inc) and anti-GAPDH (Abgent, Inc). The membranes were then incubated with species-specific HRP-conjugated secondary antibodies from ZSGB-BIO, and immunoblotting signals were visualized using the Western Bright ECL detection system (Advansta, CA).
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7

Comprehensive Immunoblotting Protocol

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Western blot analysis was conducted as previously described.14 (link) The following primary immunoblotting antibodies were used: anti-GAPDH, anti-E-cadherin, anti-Fibronectin, anti-Vimentin, anti-Snail, anti-AKT2, anti-p-AKT, anti-Rb, anti-p-Rb (Epitomics, Burlingame, CA, USA), anti-E2F1, anti-CDK4 and anti-DNMT1 (Proteintech, Chicago, IL, USA), anti-N-cadherin, anti-p27, anti-p21, anti-c-myc, anti-ERBB3, and anti-CCND1 (Cell Signaling Technology, Beverly, MA, USA).
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8

Immunofluorescence Staining of Cell Markers

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The indicated cells were cultured onto coverslips in 6-well plates until 70% confluence. Cells were then fixed with 4.0% paraformaldehyde in phosphate-buffered saline for 15 min, and blocked with 5% goat serum for 30 min. Next, the coverslips were incubated at 4°C with the indicated primary antibodies overnight. Anti-FOXO3a antibody was purchased from Cell Signaling Technology, Inc. Anti-E-cadherin and anti-Vimentin antibodies were purchased from Epitomics, Inc. Anti-N-cadherin antibody was purchased from Abcam, Inc. Subsequently, the coverslips were incubated with FITC-conjugated goat anti-rabbit secondary antibody (Abcam) or Cy3-conjugated goat anti-rabbit secondary antibody (Bioss, Beijing, P.R. China), dyed with Hoechst33342, and fixed in glycerol. The images were obtained with an Olympus IX71 microscope (Olympus, Tokyo, Japan), and color mergence was performed using ImageJ image software (ImageJ version 1.44p, NIH, MD).
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9

Immunofluorescence Analysis of Cell-Cell Adhesion

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The indicated cells were seeded onto coverslips in 6-well plates and cultured until 70% confluence. Cells were then fixed with 4.0% formaldehyde in phosphate-buffered saline for 15 min, and blocked with 5% goat serum for 30 min. Next, the coverslips were incubated at 4°C with primary antibodies overnight. Anti-E-cadherin, anti-Vimentin and anti-β-catenin antibodies were purchased from Epitomics, Inc. Subsequently, the coverslips were incubated with Cy3-conjugated goat anti-rabbit secondary antibody (Bioss, Beijing, P.R. China) and dried, dyed with Hoechst33342, and fixed in glycerol. The images were obtained with an Olympus IX71 microscope (Olympus, Tokyo, Japan), and color mergence was performed using ImageJ image software (ImageJ version 1.44p, NIH, MD).
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10

Western Blot Analysis of Cellular Proteins

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Western blot analysis was performed as described in our previous report (Wang et al, 2009a (link)). Briefly, proteins were extracted from the cultured cells and quantified using the bicinchoninic acid assay kit (Pierce, Rockford, IL, USA) with BSA as a standard. Equal amounts of protein from different cells were separated by 10% SDS–PAGE and transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA, USA). The membranes were blocked with 5% non-fat milk and incubated with primary antibodies. The target proteins were detected using an enhanced chemiluminescence kit (Amersham Pharmacia Biotech, Uppsala, Sweden). The following primary antibodies were used: anti-Smad7, anti-Smad2, anti-Smad3, anti-Smad4, anti-E-cadherin, anti-Vimentin, anti-a-SMA, anti-Desmin (Epitomics), anti-phosphorylated Smad2/3 (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), and anti-GAPDH (ProteinTech Group, Inc., Chicago, IL, USA).
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