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25 protocols using ab9969

1

Western Blot Analysis of Brain Injury

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Brains were collected at 24 or 48 h after surgery for Western blotting. The tissues from the ipsilateral cortex were homogenized in RIPA buffer (Sigma-Aldrich, St. Louis, MO, USA) with protease inhibitor cocktail (ROCHE, Indianapolis, IN, USA) and then centrifuged at 10,000 g at 4 °C for 30 min. We collected the supernatants for protein quantification with the bicinchoninic acid assay. Equal amounts of each protein sample were separated by electrophoresis in 4–15% sodium dodecyl sulfate-polyacrylamide gels and transferred to polyvinylidene fluoride membranes. After being blocked, membranes were probed during overnight incubation at 4 °C with the following primary antibodies: mouse anti-β-actin (1:3000, sc-47778, Santa Cruz Biotechnology, Dallas, TX, USA), goat anti-sEH (1:50, sc-22344, Santa Cruz Biotechnology), rabbit anti-IL-1β (1:100, ab9722, Abcam, Cambridge, MA, USA), rabbit anti-IL-10 (1:500, ab9969, Abcam), and rabbit anti-TGF-β (1:500, ab66043, Abcam). We quantitatively analyzed the protein bands with Image J software to obtain the optical densities.
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2

Western Blotting Analysis of Hippocampal Proteins

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After the behavioral experiment, three mice were randomly selected from each group for Western blotting. The brain tissue of the mice was quickly removed and the hippocampus tissue was separated at low temperature. The treated brain tissue requires extraction of histones at low temperature, followed by grinding and centrifugation of the sample. The protein concentration of the sample is determined from the standard curve and then heated to denature the proteins of the sample. Electrophoresis and membrane transfer are then performed. We use the first antibody to react with the PVDF membrane overnight, put down the second antibody the next day and finally rinse with PBS solution. The gels were then scanned using an automated gel imaging system and analysed for calculation using ImageJ software. Main antibodies and dilution ratio: Anti-Akt (ab81283, Abcam, 1:1000); Anti-beta Amyoid 1-42 (ab201060, Abcam, 1:1000); Anti-IL-1beta (ab9722, Abcam, 1:800); Anti-IL-10 (ab9969, Abcam, 1:800); Anti-PI3K (ab191606, Abcam, 1:1000); Anti-GFAP (BA0056, BOSTER, 1:800); Anti-IBA-1 (PB0517, BOSTER, 1:800); Anti-Beclin1 (ab207612, Abcam, 1:1000); Anti-LC3 (ab192890, Abcam, 1:1000); Anti-p-Akt (ab8805, Abcam, 1:1000); Anti-β-actin (GB12001, Servicebio, 1:2000).
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3

Immunohistochemical Profiling of Angiogenic Markers

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Primary antibodies included: anti-CD68 (abcam, ab31360; IF, 1:50); anti-CD31 (R&D, AF3628; IHC, 1:100); anti-α-actin (abcam, ab5694; IF, 1:200); anti-IL-10 (abcam, ab9969; IF, 1:100); anti-iNOS (abcam, ab15323; IF, 1:100); anti-TGM2 (abcam, ab421; IF, 1:100); anti-TNF-α (abcam, ab6671; IF, 1:100); anti-CD34 (abcam, ab81289; IF, 1:50); anti-Ephrin-B2 (Abclone, A5669; IHC, 1:50); anti-Eph-B4 (proteintech, 20883-1-AP; IHC, 1:50); anti-dll4 (Ablcone, A12943; IHC, 1:50); anti-COUP TF II (Abclone, A10251; IHC, 1:50). Secondary antibodies used for IF were from Abclonal, Wuhan, China.
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4

Protein Expression Analysis in Mouse Tissues

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Mouse brain tissue and colon tissue were collected from each group. Protein samples were separated on SDS−PAGE gels then electrotransferred to nitrocellulose membranes (Millipore, Burlington, MA, USA). The primary antibodies were hybridized with membranes. The primary antibodies included anti-IL-10 (1:200, ab9969, Abcam, Cambridge, MA, USA) and anti-IL-17 (1:200, ab79056, Abcam, Cambridge, MA, USA). The secondary antibodies incubated with membranes. The ImageJ software were used to scan and analyze protein bands. The bands of brain tissue were normalized to β-tubulin (ab 7291, Abcam, Cambridge, MA, USA), and colon tissue were normalized to β-actin (ab8227, Abcam, Cambridge, MA, USA).
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5

Quantification of Inflammatory Markers in Alveolar Bone

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After dewaxing and hydration of the alveolar bone section, antigen retrieval was done in boiling Tris-EDTA solution (pH = 9.0) for 15 to 20 minutes. Endogenous peroxidase was blocked by 3% hydrogen peroxide, followed by incubation with 10% normal goat serum. Incubation with primary antibodies (Abcam, Cambridge, MA) anti-CD68 (1:100, ab31630), tumor necrosis factor-α (TNF-α) (1:100, ab6671), interleukin (IL)-1β (10 μg/mL, ab9722), or IL-10 (1:100, ab9969) was done, respectively, for 2 or 3 hours at 37 centigrade. Incubation with a ready-to-use secondary antibody coupled with horseradish peroxidase (goat-anti-rabbit) (Polink-1, Golden Bridge International, Mukilteo, WA) was done for 30 minutes at 37 centigrade. For color reaction, 3,3′-diaminobenzidine was used. Phosphate buffered saline was used for blank control. The tissue was counterstained with hematoxylin. CD68+ cells (i.e., macrophages) around the second molar were counted and calculated the same as leukocyte counting. Protein levels were quantified as integrated optical density/area of interest (i.e., mean optical density) using image analysis software (Image Pro Plus, Media Cybernetics, Silver Spring, MD). Area of interest was restricted to the suprabony soft tissue mesial or distal to the second molar (200×). For each target protein, three discontinuous sections were stained for analysis.
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6

Inflammatory Protein Expression Analysis

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Tissue homogenates from the PFC and hippocampus were subjected to Western Blot (WB) analysis (n = 6/group) for the determination of protein levels of IL-1β, IL-4, IL-10, TLR4, and β-Actin. The extraction of protein and WB was performed as previously described (Agarwal et al., 2011 (link)). Primary antibodies were commercially obtained: IL-1β, and β-Actin, 1:1000 dilution (SC-7884 and SC-1616R respectively, Santa Cruz Biotechnology, Santa Cruz, CA), TLR4, IL-4, and IL-10, 1:1000 dilution (ab13556, ab9811, and ab9969 respectively, Abcam, Cambridge, MA). Secondary antibodies were commercially obtained: anti-rabbit, 1:5000 dilution (SC-2004, Santa Cruz Biotechnology, Santa Cruz, CA).
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7

Immunohistochemical and Immunofluorescent Analyses

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For immunohistochemistry staining, formalin-fixed and paraffin-embedded tissue sections were incubated with primary antibodies against MTCO1 (ab14705, Abcam), CD68 (ab955, Abcam), or CD3 (ab16669, Abcam) and then analyzed using streptavidin peroxidase detection system (Maixin) according to the manufacturer’s protocol. Diaminobenzidine (DAB) (Maixin) was used as a horseradish peroxidase (HRP)–specific substrate. For immunofluorescence staining, formaldehyde-fixed cells or kidney sections were performed with primary antibodies against RFP (ab62341, Abcam), CD63 (sc5275, Santa Cruz Biotechnology), IL-10 (ab9969, Abcam), KIM-1 (MA5-28211, Invitrogen), CD68 (ab955, Abcam), iNOS (ab15323, Abcam), CD206 (ab64693, Abcam), and CD3 (ab16669, Abcam), followed by incubation with secondary antibodies. Cell nuclei were stained with DAPI. Immunostained samples were visualized under a confocal microscope (FV1000, Olympus).
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8

Macrophage Polarization Assay

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Phorbol 12-myristate 13-acetate (PMA) and 3-(4, 5-dimethyl-2-thiazolyl)-2, 5-diphenyl-2-H-tetrazolium bromide (MTT) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Recombinant human IL-4 was purchased from R&D Systems (Minneapolis, MN, USA). Human Fc receptor binding inhibitor purified and anti-human IL-10 for neutralization were purchased from eBioscience (San Diego, CA, USA). Recombinant human IL-10 was purchased from Peprotech (Rocky Hill, NJ, USA). Antibodies and their respective sources were as follows: anti FITC mouse anti-human CD206 antibody (BD Pharmingen, 551135), anti-mannose receptor antibody (Abcam, ab64693), anti-PD-L1 antibody (Abcam, ab58810), anti-IL-10 antibody (Abcam, ab9969).
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9

Hippocampal Cytokine Expression

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Hippocampal TNF-α and IL-10 levels were measured via western blotting. Western blotting was performed as mentioned above, but without a blocking step. Primary antibodies for TNF-α (AB1837P; 1:2500, i.e., 0.2 μg/mL, Merck Millipore, Darmstadt, Germany) and for IL-10 (ab9969; 1:10000 dilution; i.e., 0.1 μg/mL; Abcam, Cambridge, MA, USA), and secondary antibody for rabbit (ab16284 1:10000 = 0.1 μg/mL, Abcam, Cambridge, MA, USA) were used.
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10

Quantifying Autophagy and IL-10 in iBMMs

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iBMMs stably expressing GFP‐LC3 were cultured on 18‐mm diameter coverslips (number 1.5, 0.17 mm thickness) in 12‐well tissue culture plates. Cells were prepared and fixed as previously described.64 In brief, after treatment with LPS (100 ng mL−1), cells were fixed with paraformaldehyde (2% in PBS) for 30 min at room temperature. They were then permeabilized with 0.1% Triton X‐100 in PBS and blocked with 1% bovine serum albumin and 0.5% goat serum in PBS for 1 h at room temperature. Cells were stained with rabbit polyclonal antibody against IL‐10 (catalog number ab175471; Abcam, Cambridge, UK) for 1 h at room temperature and then secondary stained with Alexa‐Fluor 568–conjugated anti‐rabbit monoclonal antibody (Abcam; catalog number ab9969) for 1 h at room temperature. Nuclei were stained with DAPI (4′,6‐diamidino‐2‐phenylindole; 5 μg mL−1; catalog number D9542; Sigma) for 10 min and then cells mounted on slides with fluorescence mounting medium (catalog number S3023; Dako). Cells were observed on an Olympus OM‐10 confocal microscope and images captured for quantitation of LC3+ autophagosomes. At least 100 cells (mean 214.9, range 140–314) were counted per sample and the experiment was repeated three times. Processing and analysis of staining and localization of IL‐10/LC3 were achieved using FIJI and Adobe Photoshop software.
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