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243 protocols using foxo1

1

Phospho-Specific Antibody Generation for MST1 and LATS2

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Polyclonal antibody against MST1 phosphorylated at serine 438 was raised in rabbits and generated by 21st Century Biochemicals, Inc. The immunizing peptides were GDYEFLK[pS]WTVEDL and DYEFLK[pS]WTVEDLQ. Phospho-LATS2 (Thr1041) was kindly provided by Dr. Nojima, Osaka University. Other commercially available antibodies used in the study include: Rictor, MST1 (P-Thr183), MST1 (N-terminal), Raptor, AKT1 (P-Ser473), AKT1 (P-Thr308), AKT1, p70S6K (P-Thr389), GSK-3β (P-Ser9), GSK-3β, FOXO1 (P-Thr32/24), FOXO1, YAP1 (Ser127), YAP1, GAPDH, anti-mouse, anti-rabbit, conformation-specific anti-rabbit and FLAG from Cell Signaling; MST1 (C-terminal) from BD transduction; p70S6K and Rictor from Santa Cruz; FLAG, FLAG-agarose beads, MYC and Tubulin from Sigma; Rictor and LATS2 from Bethyl Laboratories; Ki-67 from Vector Laboratories; Troponin T from Neomarkers; and Alexa Fluor-488 Donkey Anti-Goat IgG, Alexa Fluor 488 Goat Anti-Rabbit IgG, Alexa Fluor-594 Goat Anti-Mouse IgG and Alexa Fluor-568 Donkey Anti-Mouse IgG from Invitrogen.
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2

PGC-1α and FOXO1 Acetylation Analysis

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PGC-1α acetylation was determined by immunoprecipitation of PGC-1α from mouse liver lysates using PGC-1α antibody (EMD Millipore) followed by immunobloting for acetylated lysine (Cell Signaling Technology, Danvers, MA). FOXO1 acetylation was determined by immunoprecipitation with acetylated lysine antibody followed by immunobloting for FOXO1 (Cell Signaling Technology).
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3

Molecular Mechanisms of Islet Dysfunction

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Islets or cell lysates containing 20 μg were separated by 10% SDS-PAGE and transferred to PVDF membranes. After blocking with 5% skim milk, the blot was probed with primary antibody against Glut2, GK, TFAM, insulin (Santa Cruz Biotechnology), Pdx1 (Abcam, Cambridge, UK), Sirt6, FoxO1, p-FoxO1 (Cell Signaling Technology), and GAPDH (Bioworld Technology). For immunoprecipitation, 250 μg of protein precleared with protein G-agarose was incubated with anti-FoxO1 overnight at 4 °C, then with protein G-agarose at 4 °C for 2 h. Blots were probed with primary antibody against Sirt6, acetyl-lysine, FoxO1 (Cell Signaling Technology), or ubiquitin (Santa Cruz Biotechnology), and signals were detected with a Las-4000 imager (GE Healthcare Life Science, Pittsburgh, PA, USA).
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4

Quantification of AMPK, p53, and SIRT1 Signaling

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Total AMPK, phosphorylation of AMPK (pAMPK), AcP53, FOXO1, and SIRT1 were assayed by Western blot analysis. Twenty micrograms (for AMPK, pAMPK, and FOXO1), 10 μg (for AcP53), and 40 μg (for SIRT1) of protein were loaded, and antibodies (AMPK, pAMPK, FOXO1, SIRT1 (Cell Signaling, Danvers, Mass. USA) and AcP53 (Abcam, Cambridge, Mass. USA)) were used in 1:1000 (AMPK, pAMPK, and SIRT1) and 1:2000 (AcP53, FOXO1) concentrations.
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5

Western Blotting and Immunoprecipitation Protocol

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Western blotting was carried out with Tiangen using antibodies against VDR (Proteintech, #67192-1-Ig), Sirt1 (Cell Signaling Technology, #9475), Rictor (Cell Signaling Technology,#9476), FOXO1 (Cell Signaling Technology, #2880), FOXO1 phosphorylated at S256 (Cell Signaling Technology, #84192), AKT (Cell Signaling Technology), AKT phosphorylated at S473 (Cell Signaling Technology, #4060), G6pase (Bioss, #bs-4044R), PCK1 (Abcam, ab70358), and GAPDH (Proteintech, #60004-1-Ig). Immunoprecipitation was carried out according to standard procedures.
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6

Western Blot Analysis of Metabolic Proteins

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Protein was extracted in RIPA buffer with proteinase and phosphatase inhibitor cocktail (ChemCruz). 20 μg of denatured total protein for each sample was loaded into an 8–12% SDS-PAGE gel and separated by electrophoresis. The gel was transferred onto polyvinylidene fluoride (PVDF) membranes using a wet transfer method. After transfer, the membranes were probed with the following primary antibodies against PDK4, 1:1000 (ab214938; Abcam); NDUFB6, 1:10,000 (ab110244; Abcam); FOXO1, 1:1000 (14,952; Cell Signaling); FOXO1, 1:1000 (2880; Cell Signaling); ACTIN, 1:1000 (sc47778; Santa Cruz); p-AMPK (Thr172), 1:2000 (2535S; Cell Signaling); AMPKα 1:1000 (2793S; Cell Signaling); TUBULIN, 1:10,000 (ab184970; Abcam); H4, 1:1000 (ab16483; Abcam); H3, 1:500 (sc517576; Santa Cruz) GLUT4, 1:2000 (66,846; Proteintech); PDH-E1, 1:1000 (sc377092; Santa Cruz); and p-PDH (Ser293), 1:1000 (AP1062; Millipore). Anti-mouse or anti-rabbit secondary antibodies (1:10,000) were incubated for 1 h at room temperature, and membranes were developed using SuperSignal™ West Pico PLUS or West Atto ECL (Thermo Scientific).
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7

Western Blot Analysis of Insulin Signaling

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The tissues were isolated from mice in the fed condition and then immediately frozen in liquid nitrogen. Tissue homogenates were prepared, and 30–50 μg of protein was resolved on 4%–12% SDS-PAGE gels and subjected to Western blotting (12 (link)). Immunoblots were performed using antibodies against the following proteins: AKT (catalog 4685), P-AKTThr308 (catalog 13038), P-AKTSer473 (catalog 4060), FoxO1 (catalog 2880), FoxO3a (catalog D19A7), P-FoxO1Ser256 (catalog 9461), P-FoxO1Thr24/FoxO3aThr32/FoxO4Thr28 (catalog 2599), FoxO1 (catalog 2880), GSK3α/β (catalog 5676), P-GSK3βSer9 (catalog 5558), GS (catalog 3893), P-GSSer641 (catalog 94905), P-IRS-1Ser307 (catalog 2381), P-IRS-1Ser612 (catalog 3203), P-TSC2Ser939 (catalog 3615), TSC2 (catalog 3612), p-mTORSer2449 (catalog 5536), mTOR (catalog 2983), and P-ERKThr202/Tyr204 (catalog 9101) were purchased from Cell Signaling Technology. Antibodies against HNF-4α (catalog A2085), PGC-1α (catalog A11971), GK (catalog Ab293), G6Pase (catalog A16234), GKCR (catalog A5678), and β-actin (catalog AC026) were purchased from ABclonal, and ERK (catalog 514302) was purchased from Santa Cruz Biotechnology. Goat anti-mouse and goat anti–rabbit HRP–conjugated secondary antibodies (1:3000; Bio-Rad, 1662408EDU) were used for described experiments.
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8

FOXO1 Binding in Diabetic Cells

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A total of ~10 × 106 INS-1 832/13 cells per replicate were treated for 14 hours with 2.5, 11, or 30 mM glucose-containing media and were cross-linked as described. ChIP was subsequently performed using the iDeal ChIP-qPCR (Diagenode, Denville, NJ) kit according to the manufacturer’s instructions using either 1 μg of FOXO1 (C29H4, Cell Signaling Technologies) or IgG antibody (C15410206, Diagenode). Immunoprecipitated DNA (2.5 μl) was mixed with SYBR Green Master Mix and primers targeting regulatory regions of the Dbp gene (−684/−461; forward, CGCCTGTTCTGAGTTTCCTC; reverse, CGCGTGTTCACAGACTCATT′; +1158/+1298; forward, GACCGTCTCTATTGCTGGGG; reverse, GAGACGGGAGACGTAGGGTA; and +2210/+2281; forward, GGAGCTCCCCATATTCCTGC; reverse, CAAGCTCTTGGCCATCCAGA) for a total reaction volume of 20 μl. qPCR analysis was performed using the ABI StepOnePlus Real-Time PCR System, and the results were normalized to a background intergenic region (forward, GACAACCCTGGGGTAAGCTC; reverse, TCTGAGCGTCCACATCAGTG) with enrichment calculated as FC versus IgG control.
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9

Immunofluorescence Analysis of Chondrocyte Proteins

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Human chondrocytes were seeded in 8-well chamber slides at a density of 2×104 cells/well. The cells were fixed with 4% PFA for 10 min at room temperature for antibodies against FOXO1 (#14952; Cell Signaling Technology), SMAD2/3 (#8685; Cell Signaling Technology), SMAD3 (#9523; Cell Signaling Technology), SMAD2 (#5339; Cell Signaling Technology) or ice-cold 100% methanol for 15 min at −20°C for antibody against LC3 (#3868; Cell Signaling Technology), and then blocked with 5% goat serum and 0.3% Triton X-100 for 1 hour. Subsequently, the cells were incubated with each primary antibody for 1 hour. The cells were washed three times with PBS and incubated with Alexa Fluor 488 (A11008; Thermo Fisher Scientific) and 568 (A11004; Thermo Fisher Scientific) for 1 hour.
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10

Western Blotting of ACE2, FoxO1, and SARS-CoV-2 Proteins

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For Western blotting, cells and tissues were lysed in RIPA buffer (Tris-HCl 25 mM, pH 7.6; NaCl 150 mM; NP-40 1%; sodium deoxycholate 1%; SDS 0.1%) with protease inhibitors and phosphatase inhibitors. Protein concentration was measured using bicinchoninic acid (BCA) (ComWin Biotech, China). Equal amounts of protein were separated by SDS-PAGE and transferred to a PVDF membrane which was incubated in 5% milk in Tris-buffered saline for 1 h at room temperature, followed by incubation with primary antibodies against ACE2 (Cell Signaling Technology, USA, 1:1000 dilution), FoxO1 (Cell Signaling Technology, USA, 1:1000 dilution), SARS-CoV-2 Nucleocapsid (NP) (SinoBiologicals, China, 1:1000 dilution), HA (Cell Signaling Technology, USA, 1:1000 dilution) and Flag (Cell Signaling Technology, USA, 1:1000 dilution) overnight at 4°C, and a secondary antibody (1:10000 dilution) conjugated with horseradish peroxidase (Cell Signaling Technology, USA) for 1 h at room temperature. Membranes were developed with chemiluminescent ECL reagents (Millipore, USA). The relative expression of target protein to the control β-actin were determined by densitometric analysis using ImageJ software (National Institutes of Health, USA).
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