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4 protocols using alexa fluor 488 goat anti rat igg h l antibody

1

Tumor Vascularization Analysis Protocol

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Staining of tumor sections was done as previously described.9 Briefly, tumor samples excised from BALB/c nude mice were snap‐frozen in a dry‐ice acetone bath. Frozen samples were further sectioned at 10‐μm thickness in a cryostat and subsequently incubated with primary mAbs to platelet and endothelial cell adhesion molecule 1 (PECAM1) (Mec13.3) (BD Pharmingen, Franklin Lakes, NJ, USA), followed by incubation with secondary Alexa Fluor 488 goat anti‐rat IgG (H+L) antibody (Invitrogen). Specimens were then examined using an LSM 510 META confocal microscope (Carl Zeiss, Feldbach, Switzerland). All images were imported into Adobe Photoshop as JPEGs or TIFFs for figure assembly. Images were processed using ImageJ (NIH, https://imagej.nih.gov/ij/) to quantify PECAM1‐positive areas.
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2

Popliteal Lymph Node Metastasis Imaging

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In the footpad spontaneous metastasis model, the popliteal lymph node was resected, fixed with 4% (w/v) PFA overnight at 4°C, and embedded in paraffin. Five-micron sections were deparaffinized and subjected to HE staining and immunofluorescence. For immunofluorescence, anti-CEA antibody (1:200 dilution, #10094, IBL) and anti-GFP antibody (1:1000 dilution, #04404-26, anti-GFP [Rat IgG2a] monoclonal [GF090R]; Nacalai Tesque, Tokyo, Japan) were used as primary antibodies. The sections were then washed three times in Tris-buffered saline with Tween 20 (TBS-T; 50 mM Tris-HCl [pH 7.6], 150 mM NaCl, 0.1% Tween 20), followed by incubation at room temperature for 3 h with Alexa Fluor 568-conjugated anti-mouse IgG (1:500 dilution, #A-11004, Alexa Fluor 568 Goat Anti-Mouse IgG [H+L] Antibody; Invitrogen) and Alexa Fluor 488-conjugated anti-mouse IgG (1:500 dilution, #A-11006, Alexa Fluor 488 Goat Anti-Rat IgG (H+L) Antibody; Invitrogen) as the secondary antibodies. Fluorescence and differential interference contrast images of the sections were observed with a wide-field fluorescence microscope (PlanApo 20×/0.75, PlanApo 40×/0.95, ECLIPSE 80i; Nikon).
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3

Isolation and Characterization of Mouse Mesenchymal Stem Cells

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Mouse mesenchymal stem cells (MSCs) are generally isolated from the tibia and femoral marrow compartments, then cultured in a medium with Dulbecco’s modified Eagle’s medium (DMEM) containing 15% of fetal bovine serum (FBS; Sigma), 2 mm L-glutamine (Gibco, USA), 100 u/ml penicillin and 100 u/ml streptomycin(Sigma), as described previously46 (link). Culture medium was changed every 3–4 days, and non-adherent hematopoietic cells were removed in this process. Subsequent passages were performed with a 0.025% Trypsin containing 0.02% EDTA for 10 min at 37 °C. The third passage MSCs were used for experiments in this study. Characterization of MSCs was assayed using immuno-staining, as described previously36 (link). The purified primary antibodies against mouse CD29, Sca-1, and CD34 (all diluted at 1:100) were purchased from Affymetrix-eBioscience. The Alexa Fluor® 488 Goat Anti-Rat IgG (H + L) Antibody (Life Technologies) was used as secondary antibody (dilution at 1:500).
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4

Immunofluorescence Staining for MMP9 and Ly-6G

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Serial frozen sections (6 μm) were prepared and immunofluorescence staining was carried out for histological analysis. After blocking the sections with 4% normal goat serum in PBS at room temperature for 30 minutes, MMP9 antibody (ab38898, Abcam) was incubated at 4°C overnight followed by Alexa Fluor 594 goat anti-rabbit IgG or Alexa Fluor 647 anti-rabbit IgG antibody (A11037 and A21245, Life Technologies). For double immunofluorescence staining, anti-Ly-6G antibody (clone: 1A8, BioLegend) was incubated at room temperature for 1 hour followed by Alexa Fluor 488 goat anti-rat IgG (H+L) antibody (A11006, Life technologies). Nuclei were stained with DAPI using VECTASHIELD Mounting Medium (H-1200, Vector Laboratories, Inc.) and images were captured using BX63 (Olympus) equipped with ANDOR Neo sCMOS Monochrome Camera (Andor Technology Ltd.). The images were processed using ImageJ software.
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