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5 protocols using anti rbpj

1

ChIP-qPCR Analysis of T-reg Cells

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Chromatin immunoprecipitation on purified Treg cells was performed with Agarose ChIP Kit (Pierce) and anti-RBPJ (Cell signaling), anti-Notch1 (biolegend), anti- Foxp3 (MBL), anti-Histone H3 trimethylated on Lysine 4 (H3K4me3) (abcam), anti-dimethylated on Lysine 27 (H3K27me2) (Millipore) and respective isotype control antibodies. Purified DNA was subjected to real-time PCR with primers flanking RBPJ binding site at Ifng CNS-22 or with primers flanking Foxp3 binding sites on Pde3b and Ikzf2 as previously described 40 37.
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2

Comprehensive Antibody Inventory for Research

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The following antibodies were used in this study: anti-L3MBTL2 (Active Motif, 39,569), anti-E2F6 (Diagenode, C15410314), anti-RBPJ (Cell signaling, 5313), rabbit IgG (Diagenode, C15410206), mouse IgG (Santa Cruz, sc2025), anti-Flag (Merck, F3165, F4042), anti-Flag HRP (Merck, A8592), anti-GFP (Merck/Roche, 11,814,460,001), anti-VP16 (Santa Cruz, sc-7545), anti-GAPDH (Abcam, ab8245), anti-TBP (Abcam, ab818), anti-GST (kind gift from Dr. M.L. Schmitz), anti-SUMO2/3 (Abcam, ab81371), anti-VINCULIN (Abcam, ab130007), anti-mouse IgG-HRP (Cell signaling, 7076 or Amersham NXA931), anti-rabbit IgG HRP (Cell signaling, 7074), anti-rat IgG HRP (Jackson ImmunoResearch, 112-035-072), sheep anti-mouse IgG HRP (GE Healthcare, NA931V), anti-Flag (M2) conjugated agarose beads (Merck, A2220), Hemaglutinin (HA) (Covance, MMS-101P).
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3

ChIP-qPCR Analysis of T-reg Cells

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Chromatin immunoprecipitation on purified Treg cells was performed with Agarose ChIP Kit (Pierce) and anti-RBPJ (Cell signaling), anti-Notch1 (biolegend), anti- Foxp3 (MBL), anti-Histone H3 trimethylated on Lysine 4 (H3K4me3) (abcam), anti-dimethylated on Lysine 27 (H3K27me2) (Millipore) and respective isotype control antibodies. Purified DNA was subjected to real-time PCR with primers flanking RBPJ binding site at Ifng CNS-22 or with primers flanking Foxp3 binding sites on Pde3b and Ikzf2 as previously described 40 37.
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4

ChIP-seq of NOTCH1 and RBPJ

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ChIP assay was performed using ChIP-IT Express Enzymatic Kit (Active Motif). Briefly, cells were cross-linked with 1% formaldehyde and then lysed. After enzymatic digestion, samples were immunoprecipitated with anti-NOTCH1 (Abcam 27526; 1:200 dilution) or anti-RBPJ (Cell Signaling 5313, s; 1:200 dilution), or control normal anti-Rabbit IgG (Cell Signaling Technology). DNA was eluted and quantitative PCR was carried out with specific primers to amplify the RBPJ-binding site of the ERBB3 promoter (forward: 5′-GACGGTGCGGCCAGACTCCA-3′ and reverse: 5′-TCTCCCGGGGATTTGGAT-3′).
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5

Immunoblotting analysis of stem cell markers

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Immunoblotting was performed as described, using 30–100µg of lysate per sample (7 (link)), and the following antibodies: anti-YAP (Cell Signaling #4912, 1:1000), anti-phospho-YAP Ser127 (Cell Signaling #4911, 1:1000), anti-CD133 (DSHB #HB7, 1:50), anti-OCT4 (Cell Signaling #2750, 1:250–1:500), anti-RBPJ (Cell Signaling #5313, 1:1000), anti-JAG1 (Cell Signaling #2620, 1:1000), anti-Nucleolin (Abcam #ab22758, 1:1000) and anti-Actin (Sigma #A2066, 1:1000 or Sigma #A5441, 1:5000). Densitometry was performed using ImageJ (NIH), and all values were normalized to the loading control.
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