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4 protocols using trypan blue vital dye staining

1

Evaluating Cytotoxicity of Chemotherapeutics

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Leukemia cells were seeded at 25.000 cells per well in 100 µL of complete growth medium in 96-well plates and incubated with indicated chemotherapeutic agent or vehicle. T-ALL cells were split every 48 h. Briefly, 20 µL of cells were mixed with 80 µL of fresh culture medium, supplemented with vehicle or chemotherapeutic drugs at the indicated doses.
For the treatment of HCT15 cells, 250.000 cells were seeded in 2.5 mL of culture medium supplemented with the indicated drugs in a 12-well or 6-well plate format, respectively. Cell viability was assessed by counting viable cells based on trypan blue vital dye staining (Invitrogen), according to the manufacturer’s instructions.
For the treatment of organoids, Matrigel and basal organoid medium without growth factors were supplemented with vehicle or 100 U/L of asparaginase and split every 48 h.
All asparaginase experiments were performed using pegaspargase (Oncaspar, Shire Pharmaceuticals, Lexington, MA, USA), an FDA-approved PEGylated form of E. coli asparaginase. Homoharringtonine (SML1091) was obtained from Sigma-Aldrich. All drugs and reagents were used at the indicated concentrations.
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2

Cell Viability Assay for Leukemia Drugs

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Cells (25,000 per well) were seeded in 100 ml of complete growth medium in 96-well plates and incubated with chemotherapeutic agents or vehicle. T-ALL cells were split every 48 hr and AML cells were split every 72 hr. Cell viability was assessed by counting viable cells based on trypan blue vital dye staining (Invitrogen), according to the manufacturer’s instructions. Chemotherapeutic drugs included: asparaginase (pegaspargase, Shire, Lexington, MA), dexamethasone (Sigma-Aldrich), vincristine (Selleckchem, Houston, TX), doxorubicin (Sigma-Aldrich), 6-mercaptopurine (Abcam, Cambridge, UK), CHIR99021 (Selleckchem), rapamycin (Selleckchem), RAD001 (Selleckchem), AZD2014 (Selleckchem), thapsigargin (Sigma-Aldrich) and Wnt3A (R&D systems, Minneapolis, MN). BRD0705 and BRD3731 were synthesized as described (Wagner et al., 2018 ). Caspase 3/7 activity was assessed using the Caspase Glo 3/7 Assay (Promega, Madison, WI) according to the manufacturer’s instructions.
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3

Asparaginase and BRD0705 Cytotoxicity Assay

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Cells (100,000 per well) were plated in 1 ml of complete growth medium, supplemented with vehicle (PBS) or 100 U/L asparaginase and 1 μM BRD0705. Growth medium contained a final concentration of 100 nM bafilomycin (Sigma Aldrich), 10 μM chloroquine (Sigma Aldrich), or 20 mM ammonium chloride (Sigma Aldrich). Cells were split after 48 hours, and cell viability was assessed after 5 days of treatment by counting viable cells based on trypan blue vital dye staining (Invitrogen), according to the manufacturer’s instructions.
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4

Evaluating Chemotherapeutic Agents on Cell Viability

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Cells (100,000 per well) were seeded in 1 ml of complete growth medium in 12-well plates and incubated with chemotherapeutic agents or vehicle. Cells were split every 48 hours and cell viability was assessed by counting viable cells based on trypan blue vital dye staining (Invitrogen), according to the manufacturer’s instructions. Chemotherapeutic drugs included: asparaginase (pegaspargase, Shire, Lexington, MA), CHIR99021 (Selleckchem), recombinant human WNT3A protein (R&D systems, Minneapolis, MN) and recombinant human R-Spondin3 protein (R&D systems, Minneapolis, MN). BRD0705 and BRD3731 were synthesized as described (35 (link)). Caspase 3/7 activity was assessed using the Caspase Glo 3/7 Assay (Promega, Madison, WI) according to the manufacturer’s instructions.
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