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9 protocols using csu x1 confocal scanner

1

Fluorescence Imaging of Protein Aggregation

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Standard fluorescence imaging was performed with either an UltraVIEW Vox confocal imaging system (PerkinElmer), which includes an Olympus IX70 microscope, a CSU-X1 confocal scanner (Yokogawa), 488 nm and 561 nm solid-state lasers, and Volocity software; or a Nikon/Andor confocal spinning disk system, equipped with a Nikon Eclipse Ti microscope, a CSU-X1 confocal scanner (Yokogawa), 405, 488, and 561 nm solid-state lasers, and NIS Elements imaging software. FRAP experiments were performed using the Leica TCS SP8 confocal imaging platform, equipped with a DMi8 microscope, a resonant scanner, and a white-light laser tuned to 488 nm for detection of GFP-tagged aggregation-prone proteins.
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2

Microscopic Imaging of Gravid C. elegans Embryos

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Gravid hermaphrodites were dissected in a watch glass filled with a 0.7 × dilution of Egg Salts medium (1 × medium is 118 mM NaCl, 40 mM KCl, 3.4 mM MgCl2, 3.4 mM CaCl2, 5 mM HEPES, pH 7.4). Embryos were mounted on a 2% agarose pad and covered with an 18 × 18 mm coverslip (No. 1.5H; Marienfeld). All imaging was performed in temperature-controlled rooms kept at 20°C. Two microscopes were used: a Zeiss Axio Observer microscope, equipped with an Orca Flash 4.0 camera (Hamamatsu) and a Colibri 2 light source (Zeiss), controlled by ZEN software (Zeiss); and a Nikon Eclipse Ti microscope coupled to an Andor Revolution XD spinning disk confocal system, composed of an iXon Ultra 897 CCD camera (Andor Technology), a solid-state laser combiner (ALC-UVP 350i; Andor Technology), and a CSU-X1 confocal scanner (Yokogawa Electric Corporation), controlled by Andor IQ3 software (Andor Technology).
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3

Live Imaging of C. elegans Embryos

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Gravid hermaphrodite worms were dissected in a watch glass filled with Egg Salts medium (118mM KCl, 3.4 mM MgCl2, 3.4 mM CaCl2, 5 mM HEPES, pH 7.4), and embryos were mounted onto a fresh 2% agarose pad. Imaging was performed in rooms kept at 20°C. Embryos co-expressing GFP::histone H2B and GFP::γ-tubulin were imaged on an Axio Observer microscope (Zeiss) equipped with an Orca Flash 4.0 camera (Hamamatsu), a Colibri.2 light source, and controlled by ZEN software (Zeiss). Embryos expressing GFP::p50DNC-2, dynein heavy chainDHC-1::GFP, EBP-2::mKate2, and mCherry::RAB-5 were imaged on a Nikon Eclipse Ti microscope coupled to an Andor Revolution XD spinning disk confocal system composed of an iXon Ultra 897 CCD camera (Andor Technology), a solid-state laser combiner (ALC-UVP 350i, Andor Technology), and a CSU-X1 confocal scanner (Yokogawa Electric Corporation), controlled by Andor IQ3 software (Andor Technology).
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4

Confocal Imaging of Fluorescent Transgenic Animals

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Confocal fluorescence imaging was performed using NIS Elements imaging software on a Nikon confocal spinning disk system equipped with an Andor EMCCD camera, a CSU-X1 confocal scanner (Yokogawa), 405, 488, and 561 nm solid-state lasers, and 455/50, 525/26 and 605/70 nm emission filters. Transgenic animals expressing sfGFP11 or split-wrmScarlet11 were screened using a Leica M165 FC fluorescent stereomicroscope equipped with a Sola SE-V with GFP and mCherry filters.
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5

Time-Lapse Imaging of Nematode Embryogenesis

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Adult gravid hermaphrodite worms were dissected in a watch glass filled with Egg Salts medium (118 mM KCl, 3.4 mM MgCl2, 3.4 mM CaCl2, 5 mM HEPES, pH 7.4), and embryos were mounted on a fresh 2 % agarose pad and covered with an 18 mm x 18 mm coverslip (No. 1.5H, Marienfeld). Imaging was performed in a temperature-controlled room at 20°C using a Nikon Eclipse Ti microscope coupled to an Andor Revolution XD spinning disk confocal system, composed of an iXon Ultra 897 CCD camera (Andor Technology), a solid-state laser combiner (ALC-UVP 350i, Andor Technology), and a CSU-X1 confocal scanner (Yokogawa Electric Corporation), controlled by iQ3 software (Andor Technology). A 12 x 1 μm z-stack was acquired every 20 s using a 60x NA 1.4 or 100x NA 1.45 Plan-Apochromat objective.
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6

Imaging Centrosomes and Nuclei in C. elegans Embryos

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Adult gravid hermaphrodite worms were dissected in a watch glass filled with Egg Salts medium (118 mM KCl, 3.4 mM MgCl2, 3.4 mM CaCl2 and 5 mM HEPES pH 7.4), and embryos were mounted on a fresh 2% agarose pad and covered with an 18 mm×18 mm coverslip (No. 1.5H, Marienfeld). Embryos co-expressing GFP::histone H2B and GFP::γ-tubulin for tracking of centrosomes and nuclei (Fig. 1F–H; Fig. 2C–G; Fig. 3G) were imaged on an Axio Observer microscope (Zeiss) equipped with an Orca Flash 4.0 camera (Hamamatsu), a Colibri.2 light source, and controlled by ZEN software (Zeiss). All other imaging was performed on a Nikon Eclipse Ti microscope coupled to an Andor Revolution XD spinning disk confocal system composed of an iXon Ultra 897 CCD camera (Andor Technology), a solid-state laser combiner (ALC-UVP 350i, Andor Technology), and a CSU-X1 confocal scanner (Yokogawa Electric Corporation), controlled by Andor IQ3 software (Andor Technology). All imaging was performed in temperature-controlled rooms kept at 20°C. Time-lapse sequences were processed and analyzed with Fiji software (Image J version 2.0.0-rc-56/1.51 h).
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7

Confocal Imaging of Fixed and Live Samples

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Confocal imaging of fixed samples was performed on an SP8UV microscope (Leica) equipped with a 561-nm DPSS laser, a 633-nm HeNe laser, a 405-nm laser diode, and a 488-nm argon laser. A 63× oil immersion objective (NA 1.4) was used, and images were taken by using the hybrid detector photon-counting mode. Confocal live imaging was performed on either an SP8X microscope (Leica) equipped with a white light laser (Leica) by using the 488-nm laser line or a Ti microscope (Nikon) equipped with a CSU-X1 confocal scanner (Yokogawa) and an Evolve back-illuminated EMCCD camera (Photometrics). 2D videos from the SP8X microscope were taken using a 63× oil immersion objective (NA 1.4) on photomultiplier tube detection mode and time intervals of 10 min. The Ti microscope 2D videos were taken using a 60× oil immersion objective (NA 1.4), an exposure time of 800 ms, and time intervals of 10 min. All images and videos were subsequently analyzed and processed by using Fiji/ImageJ software.
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8

Live Cell Imaging of INS1 Cells

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INS1 cells were cultured on gridded coverslips (MatTek P35G-1.5-14-C-GRID). Live-cell imaging was performed using Inverted Nikon Eclipse Ti microscope (Nikon Ti PFS Spinning Disk) equipped with x100 TIRF objective (NA = 1.49), with the PFS (perfect focus system), an EMCCD camera (Evolve, Photometrics) and Yokogawa CSU-X1 Confocal Scanner. GFP and m-Cherry were excited with a 488-nm and a 561-nm laser, respectively (100 mW). Live INS1 cells were imaged at 20 frames per second. 4D imaging was performed using consecutive xy(c)tz time-lapse acquisitions. Time series of 2D sections were analyzed using FIJI and IMARIS software. In the end of experiment, the cells were immediately fixed in PFA 2.5%, Glutaraldehyde 2.5% in sodium cacodylate 0.1 M for 20 min at room temperature. The samples were then post fixed in 1% osmium tetroxide in 0.1 M cacodylate buffer for 1 h at 4 °C, dehydrated through graded alcohol (50, 70, 90, and 100%), embedded in Epon 812 cut at 70 nm (Leica Ultracut UCT) and contrasted with uranyl acetate and lead citrate. Serial sections were examined using a Philips CM12 transmission electron microscope (CM12, Philips; FEI Electron Optics, Eindhoven, the Netherlands) operated at 80 kV and equipped with an Orius 1000 CCD camera (Gatan, Pleasanton, USA).
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9

Imaging Dividing Spermatocytes in C. elegans

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Embryos co-expressing mCherry::HIS-11 and GFP::TBB-2 or expressing GFP::DHC-1 were 519 isolated and mounted as described above. Imaging was performed at 20 ºC on a Nikon Eclipse 520 Ti microscope coupled to an Andor Revolution XD spinning disk confocal system, composed 521 of an iXon Ultra 897 CCD camera (Andor Technology), a solid-state laser combiner (ALC-UVP 522 350i, Andor Technology), and a CSU-X1 confocal scanner (Yokogawa Electric Corporation). 523
The system was controlled by Andor IQ3 software (Andor Technology). Images were acquired 524 with a 60x NA 1.4 Plan-Apochromat objective at 1 x 1 binning. 525 526 Fluorescence imaging of dividing spermatocytes 527 L4 hermaphrodites or young adult males were paralyzed with in a 5-µL drop of 5 mM 528 levamisole in M9 buffer for 10 min on an 18 mm x 18 mm coverslip and mounted on a fresh 529 5 % agarose pad. Imaging was performed on the spinning disk confocal system described 530 above with a 60x NA 1.4 Plan-Apochromat objective at 1 x 1 binning. 531 532
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